Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000338 (betT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000338 showshow history
Names
betT ECDH10B_0301
Product
choline transporter of high affinity
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 304237 306270 2034 678
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000060 (IPR000060 BCCT transporter family) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name betT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001080
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0301 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product choline transporter of high affinity Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000060 BCCT transporter family Protein Sequence Similarity - InterPro Domain: IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001080 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001080
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000060
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002418 betT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002250 betT CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000809 betT CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007460 betT CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000394 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000309 betT CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009320 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007080 betT CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0005797 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076510 betT CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007066 betT CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008089 betT CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000295 betT CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004781 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0003871 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010548 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008131 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009208 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007303 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005215 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007986 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008947 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007838 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009110 betT CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007552 betT CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007468 betT CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0008911 betT CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024289 betT CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008746 betT CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005055 betT CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001080 betT CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000318 betT CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000344 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000344 betT CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130251 betT CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004922 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000344 betT CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062001 betT CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000979 betT CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001645 betT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000339 betT CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236558 betT1 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001306 betT CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005233 betT CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0004522 betT CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119083 betT CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008073 betT CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004774 betT CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003408 betT CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003041 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006316 betT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006818 betT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001266 betT CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001508 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003464 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 299237 to 311270
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000334ykgHCDScomplement299470300138Upstream
AEC-0000335betACDScomplement300351302021Upstream
AEC-0000336betBCDScomplement302035303507Upstream
AEC-0000337betICDScomplement303521304108Upstream
AEC-0000338betTCDSforward304237306270Matches
AEC-0000339yahACDSforward307145308233Downstream
AEC-0000340yahBCDScomplement308275309207Downstream
AEC-0000341yahCCDScomplement309299309796Downstream
AEC-0000342yahDCDSforward310054310659Downstream
AEC-0000343yahECDSforward310699311562Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948