Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000353 (mhpC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000353 showshow history
Names
mhpC ECDH10B_1361
Product
2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 1389891 1390772 882 294
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000639 (IPR000639 Epoxide hydrolase-like) Jul 2009
Automated Process Approved IPR000073 (IPR000073 Alpha/beta hydrolase fold-1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000639
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mhpC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001201
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_1361 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000073 Alpha/beta hydrolase fold-1 Protein Sequence Similarity - InterPro Domain: IPR000073
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000639 Epoxide hydrolase-like Protein Sequence Similarity - InterPro Domain: IPR000639
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001201 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001201
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000639
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0004516 mhpC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004833 mhpC CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008204 mhpC CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006166 mhpC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009282 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0010222 mhpC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009970 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008980 mhpC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004823 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0000377 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010596 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008178 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010782 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007910 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005263 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010473 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0008994 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0007885 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007713 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007079 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010315 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0010751 mhpC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024339 mhpC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005095 mhpC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001201 mhpC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000352 mhpC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000383 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000379 mhpC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130295 mhpC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0004970 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 1384891 to 1395772
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004563phi80lacZdelM15prophageforward13496131396987Contains
AEC-0000349lacICDScomplement13850951386177Upstream
AEC-0000350mhpRCDScomplement13862541387201Upstream
AEC-0000351mhpACDSforward13872781388942Upstream
AEC-0000352mhpBCDSforward13889441389888Upstream
AEC-0000353mhpCCDSforward13898911390772Matches
AEC-0004499Tn1000repeat_regionforward13910071396987Downstream
AEC-0004500tnpXCDScomplement13911191393215Downstream
AEC-0004501tnpRCDScomplement13932311393782Downstream
AEC-0004498tnpACDSforward13939461396954Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948