Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000366 (tauA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000366 showshow history
Names
tauA ECDH10B_0321
Product
taurine transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 323787 324749 963 321
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007210 (IPR007210 ABC-type glycine betaine transport system, substrate-binding domain) Jul 2009
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Jul 2009
Automated Process Approved IPR010068 (IPR010068 Taurine ABC transporter, substrate-binding protein TauA) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tauA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001256
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0321 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product taurine transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007210 ABC-type glycine betaine transport system, substrate-binding domain Protein Sequence Similarity - InterPro Domain: IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010068 Taurine ABC transporter, substrate-binding protein TauA Protein Sequence Similarity - InterPro Domain: IPR010068
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001256 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001256
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007210
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002413 tauA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002332 tauA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003293 tauA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000547 tauA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008189 tauA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006150 tauA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000346 tauA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009266 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008442 tauA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006883 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076546 tauA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007030 tauA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008994 tauA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000324 tauA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004839 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002404 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010612 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008194 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009741 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007927 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005279 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008925 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009010 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008827 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007729 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007150 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007956 tauA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006503 tauA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024355 tauA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008652 tauA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005111 tauA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001256 tauA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000368 tauA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000396 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000393 tauA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130310 tauA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005039 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000385 tauA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000283 tauA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005674 tauA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005024 tauA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000566 tauA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071219 tauA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086615 tauA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000344 tauA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000372 tauA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001471 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011383 ssiA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001072 tauA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001940 tauA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001008 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234641 tauA1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007818 tauA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003928 tauA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007356 tauA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003121 tauA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115921 tauA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006904 tauA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008240 tauA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001592 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009453 tauA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006841 tauA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033759 tauA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004952 tauA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004656 tauA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000126 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004450 tauA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007974 tauA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003840 tauA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004654 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000308 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 318787 to 329749
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000359yaiOCDScomplement318624319397Upstream
AEC-0000360yaiX_2CDSpcomplement319399319614Upstream
AEC-0004417yaiXpseudogenecomplement319399319808(Interval #2) Upstream
AEC-0000011IS2.1repeat_regionforward319815321145Upstream
AEC-0000361insC-1CDSforward319861320271Upstream
AEC-0000362insD-1CDSforward320229321134Upstream
AEC-0000363yaiX_1CDSpcomplement321059321427Upstream
AEC-0004417yaiXpseudogenecomplement321145321427(Interval #1) Upstream
AEC-0000364yaiPCDScomplement321294322490Upstream
AEC-0000365yaiSpseudogenecomplement322500323171Upstream
AEC-0004534yaiS_1CDSpcomplement322614323171Upstream
AEC-0000366tauACDSforward323787324749Matches
AEC-0000367tauBCDSforward324762325529Downstream
AEC-0000368tauCCDSforward325526326353Downstream
AEC-0000369tauDCDSforward326350327201Downstream
AEC-0000370hemBCDScomplement327308328282Downstream
AEC-0000372yaiT_1CDSpforward328806330266Downstream
AEC-0004419yaiTpseudogeneforward328806330263(Interval #1) Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948