Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000368 (tauC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000368 showshow history
Names
tauC ECDH10B_0323
Product
taurine transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 325526 326353 828 276
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tauC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001261
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0323 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product taurine transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001261 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001261
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002408 tauC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002356 tauC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016125 tauC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003291 tauC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000545 tauC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008187 tauC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000434 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006148 tauC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000348 tauC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009263 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008444 tauC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006885 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076549 tauC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007028 tauC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008996 tauC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000326 tauC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004841 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002402 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010614 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008196 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009743 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007929 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005281 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008923 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009012 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008829 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007731 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007152 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007958 tauC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006505 tauC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024357 tauC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008654 ssuC_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005113 tauC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001261 tauC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000370 tauC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000398 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000395 tauC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130312 tauC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005042 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000387 tauC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061782 tauC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000873 tauC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001609 tauC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001800 tauC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000285 tauC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005676 tauC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005022 tauC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000564 tauC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071217 tauC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086613 tauC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000346 tauC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000374 tauC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001469 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011374 ssiC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001070 ssuC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001942 tauC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001010 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234645 tauC1 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007816 tauC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003926 tauC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007354 tauC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003119 tauC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115926 tauC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006902 tauC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008238 tauC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001590 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009455 tauC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006843 tauC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033761 tauC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004950 tauC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004654 tauC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000129 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004448 tauC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007972 tauC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003838 tauC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004652 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000311 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 320526 to 331353
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000011IS2.1repeat_regionforward319815321145Upstream
AEC-0000362insD-1CDSforward320229321134Upstream
AEC-0000363yaiX_1CDSpcomplement321059321427Upstream
AEC-0004417yaiXpseudogenecomplement321145321427(Interval #1) Upstream
AEC-0000364yaiPCDScomplement321294322490Upstream
AEC-0000365yaiSpseudogenecomplement322500323171Upstream
AEC-0004534yaiS_1CDSpcomplement322614323171Upstream
AEC-0000366tauACDSforward323787324749Upstream
AEC-0000367tauBCDSforward324762325529Overlaps Upstream
AEC-0000368tauCCDSforward325526326353Matches
AEC-0000369tauDCDSforward326350327201Overlaps Downstream
AEC-0000370hemBCDScomplement327308328282Downstream
AEC-0000372yaiT_1CDSpforward328806330266Downstream
AEC-0004419yaiTpseudogeneforward328806330263(Interval #1) Downstream
AEC-0000012IS3.2repeat_regioncomplement330264331521Downstream
AEC-0000373insF-2CDScomplement330294331160Downstream
AEC-0000374insE-2CDScomplement331157331465Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948