Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000369 (tauD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000369 showshow history
Names
tauD ECDH10B_0324
Product
taurine dioxygenase, 2-oxoglutarate-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 326350 327201 852 284
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003819 (IPR003819 TauD/TfdA-like domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003819
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003819
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tauD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001263
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0324 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product taurine dioxygenase, 2-oxoglutarate-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003819 TauD/TfdA-like domain Protein Sequence Similarity - InterPro Domain: IPR003819
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001263 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001263
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003819
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003819
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002508 tauD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002516 tauD CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0003290 tauD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000544 tauD CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008186 tauD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000435 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006147 tauD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000349 tauD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009262 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008445 tauD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006886 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076550 tauD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007027 tauD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008997 tauD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000327 tauD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004842 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002401 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010615 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008197 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009744 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007930 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005282 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008922 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009013 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008830 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007732 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007153 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007959 tauD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006506 tauD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024358 tauD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008655 tauD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005114 tauD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001263 tauD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000371 tauD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000399 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000396 tauD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130313 tauD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005043 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000388 tauD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000286 tauD CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000563 tauD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071216 tauD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086612 tauD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000347 tauD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000375 tauD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001468 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011371 ssiD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001069 tauD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001943 tauD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001011 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0234652 tauD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007815 tauD CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003925 tauD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007353 tauD CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003118 tauD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0115935 tauD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006901 tauD CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008237 tauD CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001589 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0009456 tauD CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006844 tauD CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033762 tauD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0004949 tauD CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004653 tauD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000130 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004447 tauD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007971 tauD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0003837 tauD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0004651 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000312 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 321350 to 332201
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000363yaiX_1CDSpcomplement321059321427Upstream
AEC-0004417yaiXpseudogenecomplement321145321427(Interval #1) Upstream
AEC-0000364yaiPCDScomplement321294322490Upstream
AEC-0000365yaiSpseudogenecomplement322500323171Upstream
AEC-0004534yaiS_1CDSpcomplement322614323171Upstream
AEC-0000366tauACDSforward323787324749Upstream
AEC-0000367tauBCDSforward324762325529Upstream
AEC-0000368tauCCDSforward325526326353Overlaps Upstream
AEC-0000369tauDCDSforward326350327201Matches
AEC-0000370hemBCDScomplement327308328282Downstream
AEC-0000372yaiT_1CDSpforward328806330266Downstream
AEC-0004419yaiTpseudogeneforward328806330263(Interval #1) Downstream
AEC-0000012IS3.2repeat_regioncomplement330264331521Downstream
AEC-0000373insF-2CDScomplement330294331160Downstream
AEC-0000374insE-2CDScomplement331157331465Downstream
AEC-0004419yaiTpseudogeneforward331525332973(Interval #2) Downstream
AEC-0000375yaiT_2CDSpforward331570332973Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948