Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000384 (phoA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000384 showshow history
Names
phoA ECDH10B_0340
Product
bacterial alkaline phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 340302 341717 1416 472
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001952 (IPR001952 Alkaline phosphatase) Jul 2009
Automated Process Approved IPR017849 (IPR017849 (DEPRECATED) Alkaline phosphatase-like, alpha/beta/alpha) Jul 2009
Automated Process Approved IPR017850 (IPR017850 Alkaline-phosphatase-like, core domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001952
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001952
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name phoA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001328
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0340 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bacterial alkaline phosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001952 Alkaline phosphatase Protein Sequence Similarity - InterPro Domain: IPR001952
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017850 Alkaline-phosphatase-like, core domain superfamily Protein Sequence Similarity - InterPro Domain: IPR017850
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017849 (DEPRECATED) Alkaline phosphatase-like, alpha/beta/alpha Protein Sequence Similarity - InterPro Domain: IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001328 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001328
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001952
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016791 phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001952
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017849
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002460 phoA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002338 phoA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020389 phoA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001496 phoA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000532 phoA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008173 phoA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000446 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006133 phoA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000360 phoA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009246 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008460 phoA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006900 phoA pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076564 phoA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007012 phoA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009011 phoA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000338 phoA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004860 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002386 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010629 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008211 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009758 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007943 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005296 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008909 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009027 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008844 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007747 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007166 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007973 phoA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006519 phoA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024370 phoA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008667 phoA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005132 phoA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001328 phoA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000386 phoA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000413 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000412 phoA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130324 phoA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005058 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000403 phoA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000305 phoA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005001 phoA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071192 phoA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086593 phoA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000362 phoA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000387 phoA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003140 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0006074 phoA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0000996 phoA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000663 phoA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000456 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239275 phoA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006404 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001988 phoA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0004787 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001160 phoA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0122904 phoA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007071 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007503 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002507 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007968 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005938 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031837 phoA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008157 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002117 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0001007 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0007076 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005806 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002304 phoA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0002731 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0002300 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 335302 to 346717
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000378sbmACDSforward335194336414Upstream
AEC-0000379yaiWCDSforward336427337521Upstream
AEC-0000380yaiYCDScomplement337580337888Upstream
AEC-0000381yaiZCDSforward338148338360Upstream
AEC-0000382ddlACDScomplement338384339478Upstream
AEC-0000383iraPCDSforward339941340201Upstream
AEC-0000384phoACDSforward340302341717Matches
AEC-0000385psiFCDSforward341836342156Downstream
AEC-0000386adrACDSforward342258343373Downstream
AEC-0000387proCCDScomplement343390344199Downstream
AEC-0000388yaiICDSforward344319344777Downstream
AEC-0000389aroLCDSforward344960345484Downstream
AEC-0000390yaiACDSforward345534345725Downstream
AEC-0000391aroMCDSforward345983346660Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948