Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000387 (proC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000387 showshow history
Names
proC ECDH10B_0343
Product
pyrroline-5-carboxylate reductase, NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 343390 344199 810 270
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000304 (IPR000304 Pyrroline-5-carboxylate reductase) Jul 2009
Automated Process Approved IPR004455 (IPR004455 (DEPRECATED) NADP oxidoreductase, coenzyme F420-dependent) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000304
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004735 pyrroline-5-carboxylate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000304
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name proC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001338
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0343 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product pyrroline-5-carboxylate reductase, NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000304 Pyrroline-5-carboxylate reductase Protein Sequence Similarity - InterPro Domain: IPR000304
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004455 (DEPRECATED) NADP oxidoreductase, coenzyme F420-dependent Protein Sequence Similarity - InterPro Domain: IPR004455
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001338 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001338
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006561 proline biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000304
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004735 pyrroline-5-carboxylate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000304
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000613 proC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000737 proC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018495 proC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002650 proC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000529 proC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008170 proC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000449 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006128 proC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000363 proC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009242 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008463 proC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006903 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076567 proC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007009 proC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009014 proC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000341 proC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004863 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002383 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010632 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008214 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009761 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007946 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005299 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008906 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009030 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008847 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007750 proC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007169 proC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007976 proC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006522 proC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024373 proC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008670 proC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005135 proC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001338 proC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000389 proC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000416 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000415 proC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130327 proC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005061 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000406 proC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063942 proC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002099 proC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002113 proC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000845 proC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004600 proC CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002672 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000497 proC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004700 proC CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001250 proC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001226 proC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005753 proC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004849 proC CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004205 proC CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004710 proC CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006749 proC CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008868 proC CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004798 proC CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006938 proC CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002355 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002337 proC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003218 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005088 proC CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007025 proC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004531 proC CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006750 proC CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106106 proC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084193 proC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091749 proC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009111 proC CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005450 proC CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006472 proC CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000308 proC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005699 proC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004998 proC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000395 proC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071290 proC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086683 proC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000368 proC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000392 proC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 338390 to 349199
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000382ddlACDScomplement338384339478Downstream
AEC-0000383iraPCDSforward339941340201Downstream
AEC-0000384phoACDSforward340302341717Downstream
AEC-0000385psiFCDSforward341836342156Downstream
AEC-0000386adrACDSforward342258343373Downstream
AEC-0000387proCCDScomplement343390344199Matches
AEC-0000388yaiICDSforward344319344777Upstream
AEC-0000389aroLCDSforward344960345484Upstream
AEC-0000390yaiACDSforward345534345725Upstream
AEC-0000391aroMCDSforward345983346660Upstream
AEC-0000392yaiECDSforward346732347016Upstream
AEC-0000393ykiApseudogeneforward347164347505Upstream
AEC-0000394rdgCCDScomplement347663348574Upstream
AEC-0000395makCDSforward348699349607Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948