Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000411 (tsx) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000411 showshow history
Names
tsx ECDH10B_0367
Product
nucleoside channel, receptor of phage T6 and colicin K
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 369684 370568 885 295
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003055 (IPR003055 Nucleoside-specific channel-forming protein Tsx) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005337 nucleoside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name tsx Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001425
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0367 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product nucleoside channel, receptor of phage T6 and colicin K Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003055 Nucleoside-specific channel-forming protein Tsx Protein Sequence Similarity - InterPro Domain: IPR003055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001425 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001425
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0009279 cell outer membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005337 nucleoside transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003055
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002293 tsx CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002305 tsx CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017979 tsx CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0000988 tsx CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000502 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008142 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000474 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006100 tsx CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000386 tsx CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009213 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008488 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006928 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076595 tsx CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006985 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009041 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000365 tsx CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004892 tsx CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002352 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010663 tsx CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008245 tsx CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009794 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007979 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005332 tsx CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008875 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009061 tsx CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008880 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007781 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007203 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008007 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006552 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024405 tsx CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008695 tsx_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005163 tsx CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001425 tsx CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000413 tsx CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000442 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000444 tsx1 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130355 tsx CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005093 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000434 tsx CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0064113 tsx CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002174 tsx CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000971 tsx CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003211 tsx CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004629 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002645 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000526 tsx CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004729 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001330 tsx CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001303 tsx CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005725 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004879 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004235 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004739 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006779 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008898 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004829 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006968 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002327 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002310 tsx CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003185 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005118 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006995 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004561 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006780 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106157 tsx CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084165 tsx CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091838 tsx CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009080 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005419 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006502 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000332 tsx CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005728 tsx CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004972 tsx1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000355 tsx CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071318 tsx CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086708 tsx CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000393 tsx CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000419 tsx CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 364684 to 375568
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000406tgtCDSforward364692365819Downstream
AEC-0000407yajCCDSforward365842366174Downstream
AEC-0000408secDCDSforward366202368049Downstream
AEC-0000409secFCDSforward368060369031Downstream
AEC-0000410yajDCDSforward369160369507Downstream
AEC-0000411tsxCDScomplement369684370568Matches
AEC-0000412yajICDScomplement370867371406Upstream
AEC-0000413nrdRCDSforward371557372006Upstream
AEC-0000414ribDCDSforward372010373113Upstream
AEC-0000415ribECDSforward373202373672Upstream
AEC-0000416nusBCDSforward373692374111Upstream
AEC-0000417thiLCDSforward374189375166Upstream
AEC-0000418pgpACDSforward375144375662Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948