Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000418 (pgpA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000418 showshow history
Names
pgpA ECDH10B_0374
Product
phosphatidylglycerophosphatase A
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 375144 375662 519 173
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007686 (IPR007686 YutG/PgpA domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008962 phosphatidylglycerophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pgpA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001454
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0374 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product phosphatidylglycerophosphatase A Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007686 YutG/PgpA domain Protein Sequence Similarity - InterPro Domain: IPR007686
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001454 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001454
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006629 lipid metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008962 phosphatidylglycerophosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007686
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001354 pgpA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001703 pgpA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017567 pgpA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002612 pgpA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000495 pgpA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008135 pgpA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000481 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006093 pgpA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000393 pgpA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009204 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008495 pgpA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006935 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076603 pgpA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006977 pgpA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009048 pgpA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000372 pgpA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004899 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002345 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010670 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008252 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009801 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007986 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005339 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008868 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009068 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008887 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007788 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007210 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008014 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006559 pgpA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024412 pgpA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008702 pgpA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005170 pgpA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001454 pgpA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000420 pgpA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000449 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000453 pgpA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130362 pgpA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005100 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000442 pgpA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061375 pgpA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003199 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003627 pgpA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004637 pgpA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002635 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000533 pgpA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004737 pgpA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001348 pgpA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001321 pgpA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005716 pgpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004888 pgpA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004243 pgpA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004747 pgpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006787 pgpA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008906 pgpA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004837 pgpA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006976 pgpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002320 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002303 pgpA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003177 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005127 pgpA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006986 pgpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004570 pgpA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006789 pgpA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106171 pgpA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084158 pgpA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091867 pgpA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009071 pgpA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005411 pgpA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006511 pgpA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000339 pgpA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005735 pgpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004965 pgpA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000348 pgpA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071325 pgpA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086715 pgpA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000400 pgpA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000426 pgpA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002859 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009150 pgpA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001880 pgpA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000885 pgpA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000835 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235916 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007287 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003209 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006953 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000351 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126018 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007473 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006858 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003094 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005138 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004478 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030657 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007582 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001108 pgpA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003376 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005126 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007120 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000990 pgpA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001157 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003860 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 370144 to 380662
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000411tsxCDScomplement369684370568Upstream
AEC-0000412yajICDScomplement370867371406Upstream
AEC-0000413nrdRCDSforward371557372006Upstream
AEC-0000414ribDCDSforward372010373113Upstream
AEC-0000415ribECDSforward373202373672Upstream
AEC-0000416nusBCDSforward373692374111Upstream
AEC-0000417thiLCDSforward374189375166Overlaps Upstream
AEC-0000418pgpACDSforward375144375662Matches
AEC-0000419yajOCDScomplement375716376690Downstream
AEC-0000420dxsCDScomplement376870378732Downstream
AEC-0000421ispACDScomplement378757379656Downstream
AEC-0000422xseBCDScomplement379656379898Downstream
AEC-0000423thiICDSforward380104381552Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948