Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000421 (ispA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000421 showshow history
Names
ispA ECDH10B_0377
Product
geranyltranstransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 378757 379656 900 300
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR017446 (IPR017446 (DEPRECATED) Polyprenyl synthetase-related) Jul 2009
Automated Process Approved IPR000092 (IPR000092 Polyprenyl synthetase) Jul 2009
Automated Process Approved IPR008949 (IPR008949 Isoprenoid synthase domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000092
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ispA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001463
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0377 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product geranyltranstransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR017446 (DEPRECATED) Polyprenyl synthetase-related Protein Sequence Similarity - InterPro Domain: IPR017446
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008949 Isoprenoid synthase domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008949
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000092 Polyprenyl synthetase Protein Sequence Similarity - InterPro Domain: IPR000092
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001463 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001463
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008299 isoprenoid biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000092
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000345 ispA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000313 ispA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017571 ispA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002610 ispA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000491 ispA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008132 ispA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000484 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006090 ispA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000396 ispA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009201 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008498 ispA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006938 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076606 ispA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006974 ispA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009051 ispA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000375 ispA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004902 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002341 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010674 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008256 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009805 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007990 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005343 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008864 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009072 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008891 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007792 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007214 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008018 ispA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006563 ispA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024417 ispA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008705 ispA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005173 ispA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001463 ispA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000423 ispA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000452 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000456 ispA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130366 ispA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005104 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000445 ispA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061377 ispA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000635 ispA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000273 ispA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002048 ispA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004640 ispA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002633 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000537 ispA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004740 ispA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001358 ispA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001332 ispA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005713 ispA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004891 ispA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004246 ispA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004750 ispA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006790 ispA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008909 ispA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004840 ispA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006979 ispA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002317 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002300 ispA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003174 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005130 ispA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006983 ispA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004573 ispA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006792 ispA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106176 ispA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084155 ispA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091873 ispA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009068 ispA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005408 ispA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006514 ispA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000342 ispA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005738 ispA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004962 ispA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000339 ispA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071329 ispA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086718 ispA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000403 ispA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000429 ispA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002857 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009141 ispA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001878 ispA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000883 ispA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000837 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235925 ispA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007190 ispA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003206 ispA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006950 ispA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000354 ispA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0126008 ispA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007476 ispA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006861 ispA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003096 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005135 ispA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004481 ispA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030665 ispA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007585 ispA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001111 ispA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003373 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005129 ispA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007118 ispA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0000992 ispA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001159 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003858 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 373757 to 384656
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000416nusBCDSforward373692374111Downstream
AEC-0000417thiLCDSforward374189375166Downstream
AEC-0000418pgpACDSforward375144375662Downstream
AEC-0000419yajOCDScomplement375716376690Downstream
AEC-0000420dxsCDScomplement376870378732Downstream
AEC-0000421ispACDScomplement378757379656Matches
AEC-0000422xseBCDScomplement379656379898Overlaps Upstream
AEC-0000423thiICDSforward380104381552Upstream
AEC-0000424yajLCDScomplement381606382196Upstream
AEC-0000425panECDScomplement382159383070Upstream
AEC-0000426yajQCDSforward383238383729Upstream
AEC-0000427yajRCDScomplement383857385221Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948