Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000428 (cyoE) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000428 showshow history
Names
cyoE ECDH10B_0384
Product
protoheme IX farnesyltransferase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 385370 386260 891 297
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006369 (IPR006369 Protohaem IX farnesyltransferase) Jul 2009
Automated Process Approved IPR000537 (IPR000537 UbiA prenyltransferase family) Jul 2009
Automated Process Approved IPR011014 (IPR011014 Mechanosensitive ion channel MscS, transmembrane-2) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006783 heme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008495 protoheme IX farnesyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cyoE Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001484
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0384 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product protoheme IX farnesyltransferase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006369 Protohaem IX farnesyltransferase Protein Sequence Similarity - InterPro Domain: IPR006369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000537 UbiA prenyltransferase family Protein Sequence Similarity - InterPro Domain: IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 Protein Sequence Similarity - InterPro Domain: IPR011014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001484 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001484
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006783 heme biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011014
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008495 protoheme IX farnesyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006369
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004659 prenyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000537
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000418 cyoE CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000440 cyoE CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017589 cyoE CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002603 cyoE CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000483 cyoE CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008121 cyoE CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000492 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006083 cyoE CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000402 cyoE CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009194 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008509 cyoE CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006948 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076613 cyoE CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006964 cyoE CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009062 cyoE CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000382 cyoE CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004913 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002333 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010682 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008264 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009813 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0007998 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005351 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008856 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009080 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008899 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007800 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0007222 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008026 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006571 cyoE CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024424 cyoE CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008712 cyoE CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005184 cyoE CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001484 cyoE CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000430 cyoE CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000462 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000467 cyoE CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130373 cyoE CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005112 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000452 cyoE CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061384 cyoE CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000642 cyoE CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000277 cyoE CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002055 cyoE CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004656 cyoE CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002623 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000557 cyoE CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004756 cyoE CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001414 cyoE CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001389 cyoE CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005697 cyoE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004907 cyoE CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004262 cyoE CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0004764 cyoE CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0006807 cyoE CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008926 cyoE CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004856 cyoE CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0006995 cyoE CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002300 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002283 cyoE CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003156 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005146 cyoE CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006966 cyoE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004587 cyoE CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006806 cyoE CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106211 cyoE CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084136 cyoE CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091914 cyoE CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009051 cyoE CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005394 cyoE CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006531 cyoE CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000349 cyoE CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005746 cyoE CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004954 cyoE CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071342 cyoE CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086729 cyoE CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000444 cyoE CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002848 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009122 cyoE CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001867 cyoE CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000876 cyoE CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000844 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235946 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007181 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003198 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006942 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000362 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125974 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007484 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006869 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001846 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005127 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004489 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030674 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007593 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001122 cyoE CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003365 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005137 cyoE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007109 cyoE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001000 cyoE CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001167 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003851 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 380370 to 391260
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000423thiICDSforward380104381552Downstream
AEC-0000424yajLCDScomplement381606382196Downstream
AEC-0000425panECDScomplement382159383070Downstream
AEC-0000426yajQCDSforward383238383729Downstream
AEC-0000427yajRCDScomplement383857385221Downstream
AEC-0000428cyoECDScomplement385370386260Matches
AEC-0000429cyoDCDScomplement386272386601Upstream
AEC-0000430cyoCCDScomplement386601387215Upstream
AEC-0000431cyoBCDScomplement387205389196Upstream
AEC-0000432cyoACDScomplement389218390165Upstream
AEC-0000433ampGCDScomplement390625392100Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948