Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000433 (ampG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000433 showshow history
Names
ampG ECDH10B_0389
Product
muropeptide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 390625 392100 1476 492
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004752 (IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ampG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001501
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0389 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product muropeptide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 Protein Sequence Similarity - InterPro Domain: IPR004752
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001501 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001501
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001943 ampG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001742 ampG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017597 ampG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002598 ampG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000478 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000497 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006078 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000407 ampG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009187 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076618 ampG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000387 ampG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004918 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002327 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008269 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0009818 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005356 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007805 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006576 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024429 ampG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005189 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001501 ampG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000435 ampG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000467 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000473 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130378 ampG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005117 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000458 ampG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061389 ampG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000626 ampG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001515 ampG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002060 ampG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004662 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002617 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000562 ampG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004762 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001437 ampG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001411 ampG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005691 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004913 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004268 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008932 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004862 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007001 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002295 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002278 ampG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003150 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005152 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006960 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004593 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006812 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106222 ampG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084131 ampG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091932 ampG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009045 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005389 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006537 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000354 ampG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005751 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0004949 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000329 ampG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071353 ampG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086735 ampG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000427 ampG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000449 ampG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002842 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009099 ampG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001861 ampG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000870 ampG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000850 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0235986 ampG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007175 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003190 ampG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006936 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000368 ampG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125925 ampG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007490 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006874 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005121 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004495 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030679 ampG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007598 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001130 ampG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003356 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005142 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007103 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001006 ampG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001175 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003842 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 385625 to 397100
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000428cyoECDScomplement385370386260Downstream
AEC-0000429cyoDCDScomplement386272386601Downstream
AEC-0000430cyoCCDScomplement386601387215Downstream
AEC-0000431cyoBCDScomplement387205389196Downstream
AEC-0000432cyoACDScomplement389218390165Downstream
AEC-0000433ampGCDScomplement390625392100Matches
AEC-0000434yajGCDScomplement392144392722Upstream
AEC-0000435bolACDSforward393027393344Upstream
AEC-0000436tigCDSforward393688394986Upstream
AEC-0000437clpPCDSforward395232395855Upstream
AEC-0000438clpXCDSforward395981397255Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948