Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000444 (queC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000444 showshow history
Names
queC ECDH10B_0400
Product
enzyme in preQ0 biosynthesis
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 403407 404102 696 232
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001518 (IPR001518 Argininosuccinate synthase) Jul 2009
Automated Process Approved IPR004479 (IPR004479 (DEPRECATED) Exoenzyme S synthesis protein B/queuosine synthesis) Jul 2009
Automated Process Approved IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008616 queuosine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004479
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004055 argininosuccinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name queC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001539
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0400 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Uncurated product enzyme in preQ0 biosynthesis Experimental - PubMed ID: 16199558
Reference: Escherichia coli B 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001518 Argininosuccinate synthase Protein Sequence Similarity - InterPro Domain: IPR001518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Protein Sequence Similarity - InterPro Domain: IPR014729
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004479 (DEPRECATED) Exoenzyme S synthesis protein B/queuosine synthesis Protein Sequence Similarity - InterPro Domain: IPR004479
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001539 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001539
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008616 queuosine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004479
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006526 arginine biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004055 argininosuccinate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001518
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000675 queC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000565 queC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019552 queC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002584 queC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000464 queC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006651 queC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000509 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006066 queC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000418 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009173 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008708 queC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008615 QueC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076634 queC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006047 queC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007941 queC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000398 queC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004930 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001532 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010701 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008283 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005546 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006064 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005369 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009712 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009102 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006495 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007818 queC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0006007 queC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005757 queC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006590 queC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024440 queC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008852 queC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005202 queC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001539 queC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000446 ybaX CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000479 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000486 queC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130389 queC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005130 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000473 ybaX CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061400 queC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000624 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001517 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002073 queC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004673 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002603 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000573 queC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004773 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001477 ybaX CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001450 ybaX CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005679 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004924 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004280 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007743 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005901 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008944 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004874 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007013 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002284 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002267 queC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003134 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005163 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006949 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004604 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006823 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106248 queC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084120 queC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0091967 queC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009033 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005377 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004838 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000365 ybaX CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005763 queC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0008578 queC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000314 ybaX CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071364 queC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086747 queC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000437 ybaX CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000468 queC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002831 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0009062 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001850 queC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000859 queC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001352 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236018 queC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007163 queC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003177 queC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006925 queC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000380 queC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125895 queC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007501 queC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0006886 queC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002402 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005110 queC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004506 queC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030690 queC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007609 queC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001144 queC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003342 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005157 queC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007092 queC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001018 queC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001190 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003828 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 398407 to 409102
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000439lonCDSforward397443399797Downstream
AEC-0000440hupBCDSforward400006400278Downstream
AEC-0000441ppiDCDSforward400470402341Downstream
AEC-0000442ybaVCDSforward402492402863Downstream
AEC-0000443ybaWCDSforward402957403355Downstream
AEC-0000444queCCDScomplement403407404102Matches
AEC-0000445ybaECDScomplement404167405867Upstream
AEC-0000446cofCDSforward405967406785Upstream
AEC-0000447ybaOCDSforward406938407396Upstream
AEC-0000448mdlACDSforward407426409198Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948