Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000461 (acrA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000461 showshow history
Names
acrA ECDH10B_0419
Product
multidrug efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 422981 424174 1194 398
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006143 (IPR006143 RND efflux pump, membrane fusion protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009306 protein secretion GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name acrA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001603
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0419 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product multidrug efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006143 RND efflux pump, membrane fusion protein Protein Sequence Similarity - InterPro Domain: IPR006143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001603 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001603
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009306 protein secretion GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001238 acrA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000914 acrA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019532 acrA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002563 acrA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000444 acrA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006631 acrA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000528 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006046 acrA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000435 acrA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009129 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008688 acrA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007794 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076656 acrA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006027 acrA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007921 acrA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000419 acrA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004947 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001553 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010723 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008305 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005569 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006042 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005392 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009734 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009124 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006516 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007841 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005984 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005779 acrA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006613 acrA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024459 acrA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008872 acrA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005221 acrA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001603 acrA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000465 acrA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000497 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000505 acrA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130408 acrA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005150 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000491 acrA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061416 acrA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000651 acrA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001525 acrA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002090 acrA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004695 acrA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002580 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000602 acrA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004796 acrA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001544 acrA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001511 acrA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005656 acrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004945 acrA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004301 acrA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007765 acrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005923 acrA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008966 acrA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004896 acrA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007035 acrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002262 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002246 acrA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003112 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005184 acrA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006284 acrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004626 acrA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006845 acrA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106304 acrA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084098 acrA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092028 acrA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0009011 acrA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005354 acrA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004860 acrA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000393 acrA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005790 acrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005199 acrA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000508 acrA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071385 acrA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086766 acrA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000456 acrA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000486 acrA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002551 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008985 acrA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001826 acrA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000841 acrA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001372 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236072 acrA3 CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0006995 acrA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003153 acrA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0006907 acrA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000398 acrA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125813 acrA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007519 acrA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007938 acrA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0001754 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005091 acrA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004525 acrA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030707 acrA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0007628 acrA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001167 acrA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003318 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005173 acrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007073 acrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001037 acrA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001213 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003803 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 417981 to 429174
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000458maaCDScomplement417922418473Downstream
AEC-0004420hhaCDScomplement418645418863Downstream
AEC-0000459ybaJCDScomplement418889419263Downstream
AEC-0000460acrBCDScomplement419809422958Downstream
AEC-0000461acrACDScomplement422981424174Matches
AEC-0000462acrRCDSforward424316424963Upstream
AEC-0000463kefACDSforward425091428453Upstream
AEC-0000464ybaMCDScomplement428665428826Upstream
AEC-0000465priCCDScomplement428840429367Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948