Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000478 (ushA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000478 showshow history
Names
ushA ECDH10B_0436
Product
bifunctional UDP-sugar hydrolase and 5'-nucleotidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 443469 445121 1653 551
Sequence

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Context

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Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006179 (IPR006179 5'-Nucleotidase/apyrase) Jul 2009
Automated Process Approved IPR006146 (IPR006146 5'-Nucleotidase, conserved site) Jul 2009
Automated Process Approved IPR004843 (IPR004843 Calcineurin-like phosphoesterase domain, apaH type) Jul 2009
Automated Process Approved IPR008334 (IPR008334 5'-Nucleotidase, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ushA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001668
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0436 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product bifunctional UDP-sugar hydrolase and 5'-nucleotidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006179 5'-Nucleotidase/apyrase Protein Sequence Similarity - InterPro Domain: IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006146 5'-Nucleotidase, conserved site Protein Sequence Similarity - InterPro Domain: IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004843 Calcineurin-like phosphoesterase domain, apaH type Protein Sequence Similarity - InterPro Domain: IPR004843
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008334 5'-Nucleotidase, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008334
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001668 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001668
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009166 nucleotide catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016788 hydrolase activity, acting on ester bonds GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0046872 metal ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016787 hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006179
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006146
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001961 ushA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001631 ushA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046959 ushA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002543 ushA CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000425 ushA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006613 ushA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000545 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006028 ushA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000451 ushA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009110 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008669 ushA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007776 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076675 ushA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0006009 ushA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007903 ushA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000436 ushA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004968 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001573 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010742 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008324 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005588 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0006023 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005411 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007187 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009143 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006534 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007860 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005965 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005797 ushA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006632 ushA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024477 ushA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008890 mggB_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005239 ushA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001668 ushA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000482 ushA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000514 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000523 ushA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130425 ushA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005170 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000509 ushA CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061430 ushA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000653 ushA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000296 ushA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0001079 ushA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004718 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002559 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000624 ushA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004818 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001603 ushA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001570 ushA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004966 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004324 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007785 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005943 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0008986 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004917 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007055 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002244 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002228 ushA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003086 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005205 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006262 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004647 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008190 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092067 ushA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005332 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004882 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000413 ushA CDS
Automated Process Uncurated Go view Shigella flexneri plasmid pWR100 ACT-0247372 ushA CDS
Automated Process Uncurated Go view Shigella flexneri plasmid pWR501 ACS-0247096 ushA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001352 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008894 ushA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001805 ushA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000818 ushA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001545 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007038 ushA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 438469 to 450121
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000474aesCDScomplement437569438528Upstream
AEC-0000475gskCDSforward438680439984Upstream
AEC-0000476ybaLCDScomplement440117441793Upstream
AEC-0000477fsrCDScomplement442031443251Upstream
AEC-0000478ushACDSforward443469445121Matches
AEC-0000479ybaKCDScomplement445158445637Downstream
AEC-0004243sroBncRNAforward445759445842Downstream
AEC-0000480ybaPCDScomplement445841446635Downstream
AEC-0000481ybaQCDSforward446773447114Downstream
AEC-0000482copACDScomplement447430449934Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948