Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000502 (allA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000502 showshow history
Names
allA ECDH10B_0461
Product
ureidoglycolate hydrolase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 471006 471488 483 161
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR007247 (IPR007247 Ureidoglycolate lyase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004848 ureidoglycolate hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name allA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001747
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0461 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ureidoglycolate hydrolase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR007247 Ureidoglycolate lyase Protein Sequence Similarity - InterPro Domain: IPR007247
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001747 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001747
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0000256 allantoin catabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004848 ureidoglycolate hydrolase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR007247
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003300 allA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003717 allA CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006588 allA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000570 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0006002 allA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000476 allA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009088 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009346 allA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076695 allA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005985 allA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007879 allA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000461 allA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004991 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001611 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010778 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008360 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005623 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005987 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005446 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007223 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009179 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006570 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007898 allA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005930 allA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005831 allA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006668 allA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024511 allA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007338 allA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005261 allA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001747 allA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000506 allA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000540 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000547 allA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130458 allA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005205 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000535 ybbT CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004740 allA CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000647 allA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004840 allA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001685 allA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001644 allA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005612 allA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004988 allA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004347 allA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005965 allA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009008 allA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004939 allA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007077 allA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002223 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002207 allA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003062 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005227 allA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006240 allA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092128 allA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008967 allA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005310 allA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004904 allA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000442 ybbT CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005837 allA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005155 allA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000443 ybbT CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071425 ybbT CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086801 ybbT CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000492 ybbT CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003291 allA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 466006 to 476488
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000495rhsDCDSforward461816466096Upstream
AEC-0000496ybbCCDSforward466136466504Upstream
AEC-0000497ylbHCDSforward466504467214Upstream
AEC-0000498ybbDpseudogeneforward467195467685Upstream
AEC-0000499ylbGCDScomplement468200468571Upstream
AEC-0000500ybbBCDScomplement468687469781Upstream
AEC-0000501allSCDScomplement469850470776Upstream
AEC-0000502allACDSforward471006471488Matches
AEC-0000503allRCDSforward471566472381Downstream
AEC-0000504gclCDSforward472471474252Downstream
AEC-0000505hyiCDSforward474265475041Downstream
AEC-0000506glxRCDSforward475141476019Downstream
AEC-0000507ybbVCDSforward476051476329Downstream
AEC-0000508ybbWCDSforward476188477642Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948