Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000506 (glxR) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000506 showshow history
Names
glxR ECDH10B_0465
Product
tartronate semialdehyde reductase, NADH-dependent
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 475141 476019 879 293
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR015815 (IPR015815 3-hydroxyisobutyrate dehydrogenase-related) Jul 2009
Automated Process Approved IPR006398 (IPR006398 2-hydroxy-3-oxopropionate reductase) Jul 2009
Automated Process Approved IPR006183 (IPR006183 6-phosphogluconate dehydrogenase) Jul 2009
Automated Process Approved IPR002204 (IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site) Jul 2009
Automated Process Approved IPR006115 (IPR006115 6-phosphogluconate dehydrogenase, NADP-binding) Jul 2009
Automated Process Approved IPR016040 (IPR016040 NAD(P)-binding domain) Jul 2009
Automated Process Approved IPR013328 (IPR013328 6-phosphogluconate dehydrogenase, domain 2) Jul 2009
Automated Process Approved IPR008927 (IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0046487 glyoxylate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006573 valine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008679 2-hydroxy-3-oxopropionate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name glxR Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001759
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0465 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product tartronate semialdehyde reductase, NADH-dependent Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006183 6-phosphogluconate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR006183
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006398 2-hydroxy-3-oxopropionate reductase Protein Sequence Similarity - InterPro Domain: IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015815 3-hydroxyisobutyrate dehydrogenase-related Protein Sequence Similarity - InterPro Domain: IPR015815
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site Protein Sequence Similarity - InterPro Domain: IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006115 6-phosphogluconate dehydrogenase, NADP-binding Protein Sequence Similarity - InterPro Domain: IPR006115
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR008927
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013328 6-phosphogluconate dehydrogenase, domain 2 Protein Sequence Similarity - InterPro Domain: IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016040 NAD(P)-binding domain Protein Sequence Similarity - InterPro Domain: IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001759 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001759
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006573 valine metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0046487 glyoxylate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002204
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008679 2-hydroxy-3-oxopropionate reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006398
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0050662 (OBSOLETE) coenzyme binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR013328
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005488 binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR016040
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003320 glxR CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003694 glxR CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006584 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000574 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005998 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000480 ybbQ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009084 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009342 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008489 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076699 glxR CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005981 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007875 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000465 glxR CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0004995 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010782 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008364 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005627 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005983 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005450 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007227 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009183 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006574 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007902 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005926 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005835 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006672 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024515 glxR CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007342 glxR CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005265 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001759 glxR CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000510 glxR CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000544 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000551 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130462 glxR CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005209 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000539 ybbQ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004744 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000651 glxR CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004844 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001698 glxR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001657 glxR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005608 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0004992 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004351 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005969 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009012 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004943 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007081 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002219 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002203 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003057 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005231 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006236 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106408 garR CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084055 garR CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092140 glxR CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008963 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005306 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004908 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005151 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003295 garR_2 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 470141 to 481019
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000501allSCDScomplement469850470776Upstream
AEC-0000502allACDSforward471006471488Upstream
AEC-0000503allRCDSforward471566472381Upstream
AEC-0000504gclCDSforward472471474252Upstream
AEC-0000505hyiCDSforward474265475041Upstream
AEC-0000506glxRCDSforward475141476019Matches
AEC-0000507ybbVCDSforward476051476329Downstream
AEC-0000508ybbWCDSforward476188477642Downstream
AEC-0000509allBCDSforward477702479063Downstream
AEC-0000510ybbYCDSforward479120480421Downstream
AEC-0000511glxKCDSforward480443481588Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948