Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000514 (allD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000514 showshow history
Names
allD ECDH10B_0473
Product
ureidoglycolate dehydrogenase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 483869 484918 1050 350
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003767 (IPR003767 Malate/L-lactate dehydrogenase-like) Jul 2009
Automated Process Approved IPR017590 (IPR017590 Ureidoglycolate dehydrogenase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name allD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001780
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0473 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product ureidoglycolate dehydrogenase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003767 Malate/L-lactate dehydrogenase-like Protein Sequence Similarity - InterPro Domain: IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR017590 Ureidoglycolate dehydrogenase Protein Sequence Similarity - InterPro Domain: IPR017590
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001780 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001780
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003767
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003421 allD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003708 allD CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006575 allD CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000581 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005991 allD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000488 allD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009076 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009335 allD CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008482 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076706 allD CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005973 allD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007867 allD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000472 allD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005004 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001625 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010790 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008372 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005635 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005976 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005458 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007235 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009191 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006582 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007910 allD CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005918 allD CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005843 allD CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006680 allD CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024524 allD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007349 allD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005273 allD CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001780 allD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000518 allD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000551 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000561 allD CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130471 allD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005217 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000546 allD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004752 allD CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000659 allD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004852 allD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001725 allD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001682 allD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005600 allD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005000 allD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004360 allD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005977 allD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009020 allD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004951 allD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007089 allD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002211 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002195 allD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003049 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005239 allD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006228 allD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106424 allD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084047 allD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092162 allD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008955 allD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005298 allD CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004916 allD CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003302 allD CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 478869 to 489918
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000509allBCDSforward477702479063Downstream
AEC-0000510ybbYCDSforward479120480421Downstream
AEC-0000511glxKCDSforward480443481588Downstream
AEC-0000512ylbACDScomplement481816482601Downstream
AEC-0000513allCCDScomplement482612483847Downstream
AEC-0000514allDCDScomplement483869484918Matches
AEC-0000515fdrACDSforward485235486902Upstream
AEC-0000516ylbECDSforward486912488171Upstream
AEC-0000517ylbFCDSforward488182488997Upstream
AEC-0000518ybcFCDSforward488994489887Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948