Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000519 (purK) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000519 showshow history
Names
purK ECDH10B_0478
Product
N5-carboxyaminoimidazole ribonucleotide synthase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 490082 491149 1068 356
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR005875 (IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit) Jul 2009
Automated Process Approved IPR003135 (IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type) Jul 2009
Automated Process Approved IPR011761 (IPR011761 ATP-grasp fold) Jul 2009
Automated Process Approved IPR013817 (IPR013817 (DEPRECATED) Pre-ATP-grasp fold) Jul 2009
Automated Process Approved IPR013816 (IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2) Jul 2009
Automated Process Approved IPR011054 (IPR011054 Rudiment single hybrid motif) Jul 2009
Automated Process Approved IPR016185 (IPR016185 Pre-ATP-grasp domain superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004638 phosphoribosylaminoimidazole carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name purK Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001794
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0478 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product N5-carboxyaminoimidazole ribonucleotide synthase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR013817 (DEPRECATED) Pre-ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR013817
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011761 ATP-grasp fold Protein Sequence Similarity - InterPro Domain: IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013816 (DEPRECATED) ATP-grasp fold, subdomain 2 Protein Sequence Similarity - InterPro Domain: IPR013816
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011054 Rudiment single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011054
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016185 Pre-ATP-grasp domain superfamily Protein Sequence Similarity - InterPro Domain: IPR016185
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Protein Sequence Similarity - InterPro Domain: IPR003135
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit Protein Sequence Similarity - InterPro Domain: IPR005875
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001794 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001794
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006189 'de novo' IMP biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011761
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004638 phosphoribosylaminoimidazole carboxylase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005875
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000880 purK CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001045 purK CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0017169 purK CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002526 purK CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000403 purK CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0006569 purK CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000586 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005986 purK CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000493 purK CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0009071 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009329 purK CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008477 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076711 purK CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0005968 purK CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0007861 purK CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000477 purK CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005010 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001630 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010795 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008377 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005640 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0005971 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005463 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0007240 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009196 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0006587 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0007915 purK CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0005913 purK CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0005848 purK CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0006685 purK CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024529 purK CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007354 purK CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005279 purK CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001794 purK CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000525 purK CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000556 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000566 purK CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130476 purK CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005222 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000551 purK CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063445 purK CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0002718 purK CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001975 purK CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0000422 purK CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004757 purK CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002540 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000664 purK CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0004857 purK CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0001737 purK CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0001692 purK CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0005595 purK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005006 purK CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004365 purK CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007807 purK CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005982 purK CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0009025 purK CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0004956 purK CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007095 purK CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002206 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002190 purK CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0003044 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005245 purK CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0006223 purK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004668 purK CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008211 purK CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106431 purK CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0084042 purK CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092175 purK CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008949 purK CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0005293 purK CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0004921 purK CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000455 purK CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0005850 purK CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005221 purK CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000300 purK CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071437 purK CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086810 purK CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000501 purK CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000534 purK CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001367 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008841 purK CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001793 purK CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000806 purK CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0001557 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236209 purK CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005383 purK CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003089 purK CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0008459 purK CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000438 purK CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0125616 purK CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0007573 purK CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0007993 purK CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003955 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005036 purK CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0004579 purK CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0030759 purK CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008818 purK CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0001232 purK CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003258 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005228 purK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0007023 purK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001084 purK CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001272 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003747 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 485082 to 496149
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000515fdrACDSforward485235486902Downstream
AEC-0000516ylbECDSforward486912488171Downstream
AEC-0000517ylbFCDSforward488182488997Downstream
AEC-0000518ybcFCDSforward488994489887Downstream
AEC-0000519purKCDScomplement490082491149Matches
AEC-0000520purECDScomplement491146491655Overlaps Upstream
AEC-0000521lpxHCDScomplement491773492495Upstream
AEC-0000522ppiBCDScomplement492498492992Upstream
AEC-0000523cysSCDSforward493166494551Upstream
AEC-0000524ybcICDScomplement494587495108Upstream
AEC-0000525ybcJCDScomplement495216495428Upstream
AEC-0000526folDCDScomplement495430496296Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948