Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000567 (cusC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000567 showshow history
Names
cusC ECDH10B_0530
Product
copper/silver efflux system, outer membrane component
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 534155 535528 1374 458
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR010131 (IPR010131 RND efflux system, outer membrane lipoprotein, NodT) Jul 2009
Automated Process Approved IPR003423 (IPR003423 Outer membrane efflux protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008289 lipid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cusC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001958
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0530 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product copper/silver efflux system, outer membrane component Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR010131 RND efflux system, outer membrane lipoprotein, NodT Protein Sequence Similarity - InterPro Domain: IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003423 Outer membrane efflux protein Protein Sequence Similarity - InterPro Domain: IPR003423
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001958 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001958
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008289 lipid binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010131
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000115 cusC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001241 cusC CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001958 cusC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 529155 to 540528
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000563nfrACDScomplement526537529509Upstream
AEC-0000564nfrBCDScomplement529496531733Upstream
AEC-0000565cusSCDScomplement531883533325Upstream
AEC-0000566cusRCDScomplement533315533998Upstream
AEC-0000567cusCCDSforward534155535528Matches
AEC-0000568cusFCDSforward535686536018Downstream
AEC-0000569cusBCDSforward536034537257Downstream
AEC-0000570cusACDSforward537269540412Downstream
AEC-0000571phePCDSforward540514541890Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948