Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000569 (cusB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000569 showshow history
Names
cusB ECDH10B_0532
Product
copper/silver efflux system, membrane fusion protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 536034 537257 1224 408
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006143 (IPR006143 RND efflux pump, membrane fusion protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009306 protein secretion GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cusB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001969
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_0532 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product copper/silver efflux system, membrane fusion protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR006143 RND efflux pump, membrane fusion protein Protein Sequence Similarity - InterPro Domain: IPR006143
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0001969 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0001969
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009306 protein secretion GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008565 (OBSOLETE) protein transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006143
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002996 cusB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002728 cusB CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0001969 cusB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 531034 to 542257
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000564nfrBCDScomplement529496531733Upstream
AEC-0000565cusSCDScomplement531883533325Upstream
AEC-0000566cusRCDScomplement533315533998Upstream
AEC-0000567cusCCDSforward534155535528Upstream
AEC-0000568cusFCDSforward535686536018Upstream
AEC-0000569cusBCDSforward536034537257Matches
AEC-0000570cusACDSforward537269540412Downstream
AEC-0000571phePCDSforward540514541890Downstream
AEC-0000572ybdGCDScomplement541971543218Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948