Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000579 (fepA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000579 showshow history
Names
fepA ECDH10B_0543
Product
iron-enterobactin outer membrane transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 548809 551049 2241 747
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012910 (IPR012910 TonB-dependent receptor, plug domain) Jul 2009
Automated Process Approved IPR000531 (IPR000531 TonB-dependent receptor-like, beta-barrel) Jul 2009
Automated Process Approved IPR010105 (IPR010105 TonB-dependent siderophore receptor) Jul 2009
Automated Process Approved IPR010916 (IPR010916 TonB box, conserved site) Jul 2009
Automated Process Approved IPR010917 (IPR010917 TonB-dependent receptor, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name fepA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002014
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0543 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product iron-enterobactin outer membrane transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012910 TonB-dependent receptor, plug domain Protein Sequence Similarity - InterPro Domain: IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000531 TonB-dependent receptor-like, beta-barrel Protein Sequence Similarity - InterPro Domain: IPR000531
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010105 TonB-dependent siderophore receptor Protein Sequence Similarity - InterPro Domain: IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010917 TonB-dependent receptor, conserved site Protein Sequence Similarity - InterPro Domain: IPR010917
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010916 TonB box, conserved site Protein Sequence Similarity - InterPro Domain: IPR010916
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002014 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002014
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015891 siderophore transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004872 (DEPRECATED) receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012910
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015343 siderophore transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005506 iron ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010105
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000109 fepA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000277 fepA CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002014 fepA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 543809 to 556049
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000573nfnBCDScomplement543326543979Downstream
AEC-0000574ybdFCDScomplement544073544441Downstream
AEC-0000575ybdJCDScomplement544506544754Downstream
AEC-0000576ybdKCDScomplement544820545938Downstream
AEC-0004012hokECDSforward546391546543Downstream
AEC-0000015IS186B.2repeat_regionforward546565547903Downstream
AEC-0000577insL-2CDSforward546620547732Downstream
AEC-0000578entDCDScomplement548014548643Downstream
AEC-0000579fepACDScomplement548809551049Matches
AEC-0000580fesCDSforward551370552494Upstream
AEC-0004054ybdZCDSforward552497552715Upstream
AEC-0000581entFCDSforward552712556593Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948