Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000586 (entS) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000586 showshow history
Names
entS ybdA ECDH10B_0551
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 560855 562105 1251 417
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name entS Published Annotation - PubMed ID: 12068807
Reference: Escherichia coli C 		Dec 2007
Person Approved synonym ybdA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002036
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0551 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002036 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002036
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002525 entS CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002615 entS CDS
Ortholog
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0002036 entS CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 555855 to 567105
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000581entFCDSforward552712556593Upstream
AEC-0000582fepECDSforward556809557942Upstream
AEC-0000583fepCCDScomplement557939558754Upstream
AEC-0000584fepGCDScomplement558751559743Upstream
AEC-0000585fepDCDScomplement559740560744Upstream
AEC-0000586entSCDSforward560855562105Matches
AEC-0000587fepBCDScomplement562109563065Downstream
AEC-0000588entCCDSforward563440564615Downstream
AEC-0000589entECDSforward564625566235Downstream
AEC-0000590entBCDSforward566249567106Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948