Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000588 (entC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000588 showshow history
Names
entC ECDH10B_0553
Product
isochorismate synthase 1
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 563440 564615 1176 392
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004561 (IPR004561 Isochorismate synthase) Jul 2009
Automated Process Approved IPR005801 (IPR005801 ADC synthase) Jul 2009
Automated Process Approved IPR015890 (IPR015890 Chorismate-utilising enzyme, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008909 isochorismate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name entC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002047
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0553 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product isochorismate synthase 1 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005801 ADC synthase Protein Sequence Similarity - InterPro Domain: IPR005801
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015890 Chorismate-utilising enzyme, C-terminal Protein Sequence Similarity - InterPro Domain: IPR015890
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004561 Isochorismate synthase Protein Sequence Similarity - InterPro Domain: IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002047 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002047
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009058 biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008909 isochorismate synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004561
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002419 entC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002499 entC CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002047 entC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 558440 to 569615
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000583fepCCDScomplement557939558754Upstream
AEC-0000584fepGCDScomplement558751559743Upstream
AEC-0000585fepDCDScomplement559740560744Upstream
AEC-0000586entSCDSforward560855562105Upstream
AEC-0000587fepBCDScomplement562109563065Upstream
AEC-0000588entCCDSforward563440564615Matches
AEC-0000589entECDSforward564625566235Downstream
AEC-0000590entBCDSforward566249567106Downstream
AEC-0000591entACDSforward567106567852Downstream
AEC-0000592ybdBCDSforward567855568268Downstream
AEC-0000593cstACDSforward568449570554Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948