Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000606 (citT) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000606 showshow history
Names
citT ECDH10B_0572
Product
citrate:succinate antiporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 583672 585135 1464 488
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001898 (IPR001898 Solute carrier family 13) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name citT Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002110
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0572 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product citrate:succinate antiporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001898 Solute carrier family 13 Protein Sequence Similarity - InterPro Domain: IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002110 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002110
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006814 sodium ion transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001898
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003010 citT CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000445 citT CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002110 citT CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 578672 to 590135
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000601ahpFCDSforward578308579873Downstream
AEC-0000602uspGCDScomplement579994580422Downstream
AEC-0000603ybdRCDSforward580643581881Downstream
AEC-0000604rnkCDScomplement582112582522Downstream
AEC-0000605rnaCDScomplement582752583558Downstream
AEC-0000606citTCDScomplement583672585135Matches
AEC-0000607citGCDScomplement585186586064Upstream
AEC-0000608citXCDScomplement586039586590Upstream
AEC-0000609citFCDScomplement586594588126Upstream
AEC-0000610citECDScomplement588137589045Upstream
AEC-0000611citDCDScomplement589042589338Upstream
AEC-0000612citCCDScomplement589353590411Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948