Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000609 (citF) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000609 showshow history
Names
citF ECDH10B_0575
Product
citrate lyase, citrate-ACP transferase (alpha) subunit
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 586594 588126 1533 511
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006472 (IPR006472 Citrate lyase, alpha subunit) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006084 acetyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009346 ATP-independent citrate lyase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008814 citrate CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name citF Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002119
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0575 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product citrate lyase, citrate-ACP transferase (alpha) subunit Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006472 Citrate lyase, alpha subunit Protein Sequence Similarity - InterPro Domain: IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002119 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002119
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006084 acetyl-CoA metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009346 ATP-independent citrate lyase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008814 citrate CoA-transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001996 citF CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002084 citF CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002119 citF CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 581594 to 593126
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000603ybdRCDSforward580643581881Downstream
AEC-0000604rnkCDScomplement582112582522Downstream
AEC-0000605rnaCDScomplement582752583558Downstream
AEC-0000606citTCDScomplement583672585135Downstream
AEC-0000607citGCDScomplement585186586064Downstream
AEC-0000608citXCDScomplement586039586590Downstream
AEC-0000609citFCDScomplement586594588126Matches
AEC-0000610citECDScomplement588137589045Upstream
AEC-0000611citDCDScomplement589042589338Upstream
AEC-0000612citCCDScomplement589353590411Upstream
AEC-0000613citACDSforward590790592448Upstream
AEC-0000614citBCDSforward592417593097Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948