Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000615 (dcuC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000615 showshow history
Names
dcuC ECDH10B_0581
Product
anaerobic C4-dicarboxylate transport
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 593138 594523 1386 462
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR004669 (IPR004669 C4-dicarboxylate anaerobic carrier) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dcuC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002133
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_0581 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product anaerobic C4-dicarboxylate transport Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR004669 C4-dicarboxylate anaerobic carrier Protein Sequence Similarity - InterPro Domain: IPR004669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002133 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002133
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015740 C4-dicarboxylate transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0015556 C4-dicarboxylate transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004669
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002504 dcuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002409 dcuC CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002133 dcuC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 588138 to 599523
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000610citECDScomplement588137589045Downstream
AEC-0000611citDCDScomplement589042589338Downstream
AEC-0000612citCCDScomplement589353590411Downstream
AEC-0000613citACDSforward590790592448Downstream
AEC-0000614citBCDSforward592417593097Downstream
AEC-0000615dcuCCDScomplement593138594523Matches
AEC-0000616crcACDSforward595112595672Upstream
AEC-0000617cspECDSforward595847596056Upstream
AEC-0000618crcBCDScomplement596110596493Upstream
AEC-0000619ybeM_1CDSpforward596586596813Upstream
AEC-0004422ybeMpseudogeneforward596586597373Upstream
AEC-0000620ybeM_2CDSpforward596810597373Upstream
AEC-0000621tatECDSforward597502597705Upstream
AEC-0000622lipACDScomplement597806598771Upstream
AEC-0000623ybeFCDScomplement598980599933Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948