Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000624 (lipB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000624 showshow history
Names
lipB ECDH10B_0591
Product
lipoyl-protein ligase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 600192 600833 642 214
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000544 (IPR000544 Octanoyltransferase) Jul 2009
Automated Process Approved IPR004143 (IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009107 lipoate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006464 cellular protein modification process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name lipB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002160
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0591 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product lipoyl-protein ligase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000544 Octanoyltransferase Protein Sequence Similarity - InterPro Domain: IPR000544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Protein Sequence Similarity - InterPro Domain: IPR004143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002160 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002160
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006464 cellular protein modification process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009107 lipoate biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000544
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004143
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000335 lipB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000378 lipB CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002160 lipB CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 595192 to 605833
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000616crcACDSforward595112595672Downstream
AEC-0000617cspECDSforward595847596056Downstream
AEC-0000618crcBCDScomplement596110596493Downstream
AEC-0000619ybeM_1CDSpforward596586596813Downstream
AEC-0004422ybeMpseudogeneforward596586597373Downstream
AEC-0000620ybeM_2CDSpforward596810597373Downstream
AEC-0000621tatECDSforward597502597705Downstream
AEC-0000622lipACDScomplement597806598771Downstream
AEC-0000623ybeFCDScomplement598980599933Downstream
AEC-0000624lipBCDScomplement600192600833Matches
AEC-0000625ybeDCDScomplement600934601197Upstream
AEC-0000626dacACDScomplement601307602518Upstream
AEC-0000627rlpACDScomplement602657603745Upstream
AEC-0000628mrdBCDScomplement603756604868Upstream
AEC-0000629mrdACDScomplement604871606772Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948