Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000626 (dacA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000626 showshow history
Names
dacA ECDH10B_0593
Product
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 601307 602518 1212 404
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Automated Process Approved IPR015956 (IPR015956 Penicillin-binding protein, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR001967 (IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal) Jul 2009
Automated Process Approved IPR012907 (IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dacA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002168
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0593 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001967
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015956 Penicillin-binding protein, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002168 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002168
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001519 dacA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001353 dacA CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002168 dacA CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 596307 to 607518
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000618crcBCDScomplement596110596493Downstream
AEC-0000619ybeM_1CDSpforward596586596813Downstream
AEC-0004422ybeMpseudogeneforward596586597373Downstream
AEC-0000620ybeM_2CDSpforward596810597373Downstream
AEC-0000621tatECDSforward597502597705Downstream
AEC-0000622lipACDScomplement597806598771Downstream
AEC-0000623ybeFCDScomplement598980599933Downstream
AEC-0000624lipBCDScomplement600192600833Downstream
AEC-0000625ybeDCDScomplement600934601197Downstream
AEC-0000626dacACDScomplement601307602518Matches
AEC-0000627rlpACDScomplement602657603745Upstream
AEC-0000628mrdBCDScomplement603756604868Upstream
AEC-0000629mrdACDScomplement604871606772Upstream
AEC-0000630ybeACDScomplement606803607270Upstream
AEC-0000631ybeBCDScomplement607274607591Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948