Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000632 (cobC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000632 showshow history
Names
cobC ECDH10B_0599
Product
predicted alpha-ribazole-5'-P phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 607851 608462 612 204
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR017578 (IPR017578 Alpha-ribazole phosphatase, CobC) Jul 2009
Automated Process Approved IPR001345 (IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site) Jul 2009
Automated Process Approved IPR013078 (IPR013078 Histidine phosphatase superfamily, clade-1) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017578
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043755 alpha-ribazole phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017578
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cobC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002185
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0599 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted alpha-ribazole-5'-P phosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR017578 Alpha-ribazole phosphatase, CobC Protein Sequence Similarity - InterPro Domain: IPR017578
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013078 Histidine phosphatase superfamily, clade-1 Protein Sequence Similarity - InterPro Domain: IPR013078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site Protein Sequence Similarity - InterPro Domain: IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002185 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002185
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017578
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001345
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0043755 alpha-ribazole phosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR017578
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002783 cobC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002871 cobC CDS
Ortholog
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002185 cobC CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 602851 to 613462
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0004523repeat_regionforward514341740860Contains
AEC-0000627rlpACDScomplement602657603745Downstream
AEC-0000628mrdBCDScomplement603756604868Downstream
AEC-0000629mrdACDScomplement604871606772Downstream
AEC-0000630ybeACDScomplement606803607270Downstream
AEC-0000631ybeBCDScomplement607274607591Downstream
AEC-0000632cobCCDScomplement607851608462Matches
AEC-0000633nadDCDScomplement608486609127Upstream
AEC-0000634holACDScomplement609129610160Upstream
AEC-0000635rlpBCDScomplement610160610741Upstream
AEC-0000636leuSCDScomplement610756613338Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948