AEC-0000636 (leuS) - Escherichia coli K-12 DH10B

Overview

Context

Seq Similarity

Alignments

Protein Families

Protein Domains

Gene Ontology

Annotations

Comparative

Interactions

Experimental

Strains

Context Table

Links

Release Notes

ASAP ID

AEC-0000636 show

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Names

leuS ECDH10B_0603

Product

leucyl-tRNA synthetase

Type

CDS

Location

#	Contig	Strand	Left	Right	Length (b.p.)	Length (a.a.)
1	Chromosome	complement	610756	613338	2583	861

Sequence

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Context

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Protein Families to top

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		Family	Annotated
		IPR002302 (IPR002302 Leucine-tRNA ligase)	Jul 2009
		IPR009008 (IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain)	Jul 2009
		IPR009080 (IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding)	Jul 2009
		IPR014729 (IPR014729 Rossmann-like alpha/beta/alpha sandwich fold)	Jul 2009
		IPR001412 (IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site)	Jul 2009
		IPR002300 (IPR002300 Aminoacyl-tRNA synthetase, class Ia)	Jul 2009
		IPR013155 (IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding)	Jul 2009

Protein Domains to top

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Internal error getting result

Gene Ontology to top

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Type	Annotation	Evidence	Annotated
GO biological process	GO:0006418 tRNA aminoacylation for protein translation	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009008 Reference: Escherichia coli K-12 DH10B	Jul 2009
GO biological process	GO:0006429 leucyl-tRNA aminoacylation	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
GO biological process	GO:0006412 translation	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
GO cellular component	GO:0005737 cytoplasm	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
GO molecular function	GO:0004812 aminoacyl-tRNA ligase activity	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009008 Reference: Escherichia coli K-12 DH10B	Jul 2009
GO molecular function	GO:0005524 ATP binding	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
GO molecular function	GO:0004823 leucine-tRNA ligase activity	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
GO molecular function	GO:0000166 nucleotide binding	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009

Annotations to top

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NCBI Definitions and Examples

Information on MultiFun

	Type	Annotation	Evidence	Annotated
Nomenclature
	name	leuS	Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002196 Reference: Escherichia coli K-12 MG1655	Mar 2007
	locus tag	ECDH10B_0603	Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu Reference: Escherichia coli K-12 DH10B	Feb 2008
Product
	product	leucyl-tRNA synthetase	Published Annotation - PubMed ID: 16397293 Reference: Escherichia coli K-12	Mar 2007
Protein Family
	protein family	IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain	Protein Sequence Similarity - InterPro Domain: IPR009008 Reference: Escherichia coli K-12 DH10B	Jul 2009
	protein family	IPR002302 Leucine-tRNA ligase	Protein Sequence Similarity - InterPro Domain: IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
	protein family	IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding	Protein Sequence Similarity - InterPro Domain: IPR009080 Reference: Escherichia coli K-12 DH10B	Jul 2009
	protein family	IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site	Protein Sequence Similarity - InterPro Domain: IPR001412 Reference: Escherichia coli K-12 DH10B	Jul 2009
	protein family	IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding	Protein Sequence Similarity - InterPro Domain: IPR013155 Reference: Escherichia coli K-12 DH10B	Jul 2009
	protein family	IPR002300 Aminoacyl-tRNA synthetase, class Ia	Protein Sequence Similarity - InterPro Domain: IPR002300 Reference: Escherichia coli K-12 DH10B	Jul 2009
	protein family	IPR014729 Rossmann-like alpha/beta/alpha sandwich fold	Protein Sequence Similarity - InterPro Domain: IPR014729 Reference: Escherichia coli K-12 DH10B	Jul 2009
Other
	comment	100% identical to E. coli K-12 MG1655 feature ABE-0002196	Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002196 Reference: Escherichia coli K-12 MG1655	Mar 2007
Gene Ontology
	GO biological process	GO:0006418 tRNA aminoacylation for protein translation	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009008 Reference: Escherichia coli K-12 DH10B	Jul 2009
	GO biological process	GO:0006429 leucyl-tRNA aminoacylation	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
	GO biological process	GO:0006412 translation	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
	GO cellular component	GO:0005737 cytoplasm	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
	GO molecular function	GO:0000166 nucleotide binding	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
	GO molecular function	GO:0004812 aminoacyl-tRNA ligase activity	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR009008 Reference: Escherichia coli K-12 DH10B	Jul 2009
	GO molecular function	GO:0005524 ATP binding	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009
	GO molecular function	GO:0004823 leucine-tRNA ligase activity	GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002302 Reference: Escherichia coli K-12 DH10B	Jul 2009

Comparative to top

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	Details	Genome	Feature	Name	Type
Member
	view	OrthoMCL (205 gammaproteobacteria)	APP-0000127	leuS	CDS
	view	OrthoMCL (307 Enterobacteriaceae)	ATM-0000117	leuS	CDS
Ortholog
	view	Escherichia coli K-12 MG1655	ABE-0002196	leuS	CDS

Context Table to top

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Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 605756 to 618338
FeatureID	Name	Feature Type	Strand	Left End	Right End	Relationship
AEC-0000001		source	forward	1	4686137	Contains
AEC-0004523		repeat_region	forward	514341	740860	Contains
AEC-0000629	mrdA	CDS	complement	604871	606772	Downstream
AEC-0000630	ybeA	CDS	complement	606803	607270	Downstream
AEC-0000631	ybeB	CDS	complement	607274	607591	Downstream
AEC-0000632	cobC	CDS	complement	607851	608462	Downstream
AEC-0000633	nadD	CDS	complement	608486	609127	Downstream
AEC-0000634	holA	CDS	complement	609129	610160	Downstream
AEC-0000635	rlpB	CDS	complement	610160	610741	Downstream
AEC-0000636	leuS	CDS	complement	610756	613338	Matches
AEC-0000637	ybeL	CDS	forward	613573	614055	Upstream
AEC-0000638	ybeQ	CDS	complement	614125	615102	Upstream
AEC-0000639	ybeR	CDS	forward	615266	615973	Upstream
AEC-0000640	djlB	CDS	forward	615970	617397	Upstream
AEC-0000641	ybeT	CDS	complement	617407	617961	Upstream
AEC-0000642	ybeU	CDS	forward	618063	618770	Upstream

Release Notes to top

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submitted to GenBank; assigned accession number CP000948

AEC-0000636 (leuS) - Escherichia coli K-12 DH10B - Feature Annotation