Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000689 (ybgH) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000689 showshow history
Names
ybgH ECDH10B_0776
Product
predicted transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 792890 794371 1482 494
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000109 (IPR000109 Proton-dependent oligopeptide transporter family) Jul 2009
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR005279 (IPR005279 Dipeptide/tripeptide permease) Jul 2009
Protein Domains to toptop
Internal error getting result
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ybgH Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002420
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0776 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005279 Dipeptide/tripeptide permease Protein Sequence Similarity - InterPro Domain: IPR005279
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000109 Proton-dependent oligopeptide transporter family Protein Sequence Similarity - InterPro Domain: IPR000109
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002420 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002420
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002947 dtpD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0003243 dtpD CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000245 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008544 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000729 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005807 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000626 ybgH CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008876 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008749 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007460 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076872 dtpD CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009393 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000623 ybgH CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005181 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002725 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010971 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008551 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005817 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008736 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005639 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009606 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009371 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009081 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006585 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009534 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009078 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007176 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024695 ybgH CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009318 dtpD CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005437 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002420 dtpD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000716 ybgH CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000785 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000723 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130636 ybgH CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005383 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000709 ybgH CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004935 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002341 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000868 ybgH CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005092 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002273 ybgH CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002206 ybgH CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008649 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005197 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004554 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007161 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005132 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004339 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005140 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008937 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002044 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002031 ybgH CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002838 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005431 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007992 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004957 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008044 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106765 CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083880 CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092688 ybgH CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008760 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006508 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007158 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000612 ybgH CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006023 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006696 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071591 ybgH CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086937 ybgH CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000660 ybgH CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000710 ybgH CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 787890 to 799371
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000684ybfCCDSforward787465788034Downstream
AEC-0000017ISEc2repeat_regionforward788117788496Downstream
AEC-0004057ybfQCDSforward788260788514Downstream
AEC-0000018ISEc3repeat_regionforward788497789786Downstream
AEC-0000685ybfLpseudogeneforward788640789776Downstream
AEC-0000019ISEc4repeat_regionforward789787790740Downstream
AEC-0000686ybfDCDSforward789907790668Downstream
AEC-0000687ybgACDSforward790816791325Downstream
AEC-0000688phrCDSforward791322792740Downstream
AEC-0000689ybgHCDScomplement792890794371Matches
AEC-0000690ybgICDSforward794642795385Upstream
AEC-0000691ybgJCDSforward795408796064Upstream
AEC-0000692ybgKCDSforward796058796990Upstream
AEC-0000693ybgLCDSforward796980797714Upstream
AEC-0000694neiCDSforward797750798541Upstream
AEC-0000695abrBCDScomplement798538799584Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948