Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000705 (sucA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000705 showshow history
Names
sucA ECDH10B_0792
Product
2-oxoglutarate decarboxylase, thiamin-requiring
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 810521 813322 2802 934
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001017 (IPR001017 Dehydrogenase, E1 component) Jul 2009
Automated Process Approved IPR005475 (IPR005475 Transketolase-like, pyrimidine-binding domain) Jul 2009
Automated Process Approved IPR011603 (IPR011603 2-oxoglutarate dehydrogenase E1 component) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sucA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002478
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0792 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product 2-oxoglutarate decarboxylase, thiamin-requiring Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR005475 Transketolase-like, pyrimidine-binding domain Protein Sequence Similarity - InterPro Domain: IPR005475
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011603 2-oxoglutarate dehydrogenase E1 component Protein Sequence Similarity - InterPro Domain: IPR011603
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001017 Dehydrogenase, E1 component Protein Sequence Similarity - InterPro Domain: IPR001017
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002478 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002478
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001017
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000093 sucA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000098 sucA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016951 sucA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002379 sucA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008527 sucA CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005791 sucA CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008856 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008731 sucA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007444 CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009268 sucA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009412 sucA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005198 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002743 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010989 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008569 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005835 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008755 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005658 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010097 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009392 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009101 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006604 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009554 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009059 sucA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007195 sucA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024713 sucA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005453 sucA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002478 sucA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000732 sucA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000802 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000737 sucA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130654 sucA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005402 CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061613 sucA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000765 sucA CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000353 sucA CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003877 sucA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004947 sucA CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002325 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000883 sucA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005104 sucA CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002313 sucA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002245 sucA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008661 sucA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005224 sucA CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004581 sucA CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007186 sucA CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005144 sucA CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004351 sucA CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005165 sucA CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008912 sucA CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002019 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002007 sucA CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002811 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005456 sucA CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007968 sucA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004982 sucA CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008069 sucA CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106811 sucA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083854 sucA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092768 sucA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008736 sucA CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006483 sucA CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007183 sucA CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000629 sucA CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006042 sucA CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006716 sucA CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000744 sucA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071573 sucA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086922 sucA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000644 sucA CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000727 sucA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003041 sucA CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008513 sucA CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003706 sucA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002157 sucA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002181 sucA CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236700 sucA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005494 sucA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000725 sucA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005174 sucA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002250 sucA CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118890 sucA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008013 sucA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004834 sucA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000533 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007619 sucA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005410 sucA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032817 sucA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005528 sucA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003470 sucA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003105 sucA CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005986 sucA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006879 sucA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001208 sucA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001440 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003534 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 805521 to 818322
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000700gltACDScomplement805000806283Upstream
AEC-0000701sdhCCDSforward806992807381Upstream
AEC-0000702sdhDCDSforward807375807722Upstream
AEC-0000703sdhACDSforward807722809488Upstream
AEC-0000704sdhBCDSforward809504810220Upstream
AEC-0000705sucACDSforward810521813322Matches
AEC-0000706sucBCDSforward813337814554Downstream
AEC-0000707sucCCDSforward814829815995Downstream
AEC-0000708sucDCDSforward815995816864Downstream
AEC-0000709mngRCDScomplement816968817690Downstream
AEC-0000710mngACDSforward817799819775Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948