Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000706 (sucB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000706 showshow history
Names
sucB ECDH10B_0793
Product
dihydrolipoyltranssuccinase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 813337 814554 1218 406
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003016 (IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site) Jul 2009
Automated Process Approved IPR004167 (IPR004167 Peripheral subunit-binding domain) Jul 2009
Automated Process Approved IPR000089 (IPR000089 Biotin/lipoyl attachment) Jul 2009
Automated Process Approved IPR001078 (IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain) Jul 2009
Automated Process Approved IPR011053 (IPR011053 Single hybrid motif) Jul 2009
Automated Process Approved IPR006255 (IPR006255 Dihydrolipoamide succinyltransferase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0045252 oxoglutarate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name sucB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002480
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0793 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dihydrolipoyltranssuccinase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR004167 Peripheral subunit-binding domain Protein Sequence Similarity - InterPro Domain: IPR004167
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Protein Sequence Similarity - InterPro Domain: IPR003016
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000089 Biotin/lipoyl attachment Protein Sequence Similarity - InterPro Domain: IPR000089
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain Protein Sequence Similarity - InterPro Domain: IPR001078
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR006255 Dihydrolipoamide succinyltransferase Protein Sequence Similarity - InterPro Domain: IPR006255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011053 Single hybrid motif Protein Sequence Similarity - InterPro Domain: IPR011053
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002480 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002480
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006099 tricarboxylic acid cycle GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0045252 oxoglutarate dehydrogenase complex GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005515 protein binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008415 (DEPRECATED) acyltransferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004167
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000149 sucB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000169 sucB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0016950 sucB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002378 sucB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000218 sucB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008526 sucB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000745 sucB CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005790 sucB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000642 sucB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008855 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008730 sucB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007443 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076888 sucB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0009267 sucB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009413 sucB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000637 sucB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005199 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002744 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0010990 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008570 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005836 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008756 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005659 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010098 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009393 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009102 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006605 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009555 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009058 sucB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007196 sucB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024714 sucB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009304 sucB_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005454 sucB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002480 sucB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000733 sucB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000803 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000738 sucB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130655 sucB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005403 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000724 sucB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061614 sucB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000773 sucB CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000354 sucB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0003878 sucB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004948 sucB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002324 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000884 sucB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005105 sucB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002317 sucB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002248 sucB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008662 sucB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005225 sucB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004582 sucB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007187 sucB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005145 sucB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004352 sucB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005166 sucB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008911 sucB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002018 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0002006 sucB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002810 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005457 sucB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007967 sucB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004983 sucB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008070 sucB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106813 sucB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083853 sucB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092771 sucB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008735 sucB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006482 sucB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007184 sucB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000630 sucB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006043 sucB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006717 sucB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000745 sucB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071572 sucB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086921 sucB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000643 sucB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000728 sucB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003040 sucB CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008509 sucB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003707 sucB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002158 sucB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002180 sucB CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236699 sucB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005495 sucB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000726 sucB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005175 sucB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002249 sucB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118892 sucB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008014 sucB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004833 sucB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000532 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007620 sucB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005409 sucB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032816 sucB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005527 sucB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003469 sucB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003104 sucB CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005985 sucB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006878 sucB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001209 sucB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001441 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003533 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 808337 to 819554
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000703sdhACDSforward807722809488Upstream
AEC-0000704sdhBCDSforward809504810220Upstream
AEC-0000705sucACDSforward810521813322Upstream
AEC-0000706sucBCDSforward813337814554Matches
AEC-0000707sucCCDSforward814829815995Downstream
AEC-0000708sucDCDSforward815995816864Downstream
AEC-0000709mngRCDScomplement816968817690Downstream
AEC-0000710mngACDSforward817799819775Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948