Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000711 (mngB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000711 showshow history
Names
mngB ECDH10B_0798
Product
alpha-mannosidase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 819793 822426 2634 878
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000602 (IPR000602 Glycoside hydrolase family 38, N-terminal domain) Jul 2009
Automated Process Approved IPR011682 (IPR011682 Glycosyl hydrolase family 38, C-terminal) Jul 2009
Automated Process Approved IPR011330 (IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006013 mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011330
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004559 alpha-mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015923 mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name mngB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002495
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0798 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product alpha-mannosidase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000602 Glycoside hydrolase family 38, N-terminal domain Protein Sequence Similarity - InterPro Domain: IPR000602
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011682 Glycosyl hydrolase family 38, C-terminal Protein Sequence Similarity - InterPro Domain: IPR011682
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel Protein Sequence Similarity - InterPro Domain: IPR011330
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002495 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002495
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006013 mannose metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0005975 carbohydrate metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015923 mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011682
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011330
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004559 alpha-mannosidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000602
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0005098 mngB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0004653 mngB CDS
Ortholog
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008521 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005785 CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008850 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008724 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007438 MngB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009419 CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005204 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002495 mngB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000738 mngB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000808 CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071567 ybgG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086916 ybgG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000638 ybgG CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 814793 to 827426
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000707sucCCDSforward814829815995Upstream
AEC-0000708sucDCDSforward815995816864Upstream
AEC-0000709mngRCDScomplement816968817690Upstream
AEC-0000710mngACDSforward817799819775Upstream
AEC-0000711mngBCDSforward819793822426Matches
AEC-0000712cydACDSforward823273824841Downstream
AEC-0000713cydBCDSforward824857825996Downstream
AEC-0004058ybgTCDSforward826011826124Downstream
AEC-0000714ybgECDSforward826124826417Downstream
AEC-0000715ybgCCDSforward826567826971Downstream
AEC-0000716tolQCDSforward826968827660Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948