Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000713 (cydB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000713 showshow history
Names
cydB ECDH10B_0800
Product
cytochrome d terminal oxidase, subunit II
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 824857 825996 1140 380
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR003317 (IPR003317 Cytochrome ubiquinol oxidase subunit 2) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cydB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002501
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0800 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cytochrome d terminal oxidase, subunit II Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR003317 Cytochrome ubiquinol oxidase subunit 2 Protein Sequence Similarity - InterPro Domain: IPR003317
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002501 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002501
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003317
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001708 cydB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001503 cydB CDS
Ortholog
Person Uncurated Go view Dickeya dadantii 3937 ABF-0017460 cydB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002374 cydB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000210 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0008518 cydB1 CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000751 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005782 cydB CDS
Person Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0005228 cydB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008848 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008721 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007435 CDS
Automated Process Approved Go view Escherichia coli CFT073 (UPEC) ABR-0076896 cydB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009422 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000649 cydB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005208 cydB CDS
Person Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002761 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0011007 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008587 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005853 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005676 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010115 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009412 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009119 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006622 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009041 cydB1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007214 cydB1 CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024734 cydB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009297 cydB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005466 cydB1 CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0002501 cydB CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0000740 cydB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000811 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000755 cydB1 CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0130672 cydB CDS
Person Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005419 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000731 cydB CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000739 cydB CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061618 cydB1 CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004518 cydB1 CDS
Person Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002668 cydB1 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004545 cydB1 CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004955 cydB1 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002307 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000889 cydB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005111 cydB1 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002335 cydB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002266 cydB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008669 cydB1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005233 cydB1 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004590 cydB1 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007195 cydB1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005152 cydB1 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004359 cydB1 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005174 cydB1 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0008904 cydB1 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0002014 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0002002 cydB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002799 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005462 cydB1 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0007959 cydB1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0004989 cydB1 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0008076 cydB1 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0106827 cydB CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0083849 cydB CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092788 cydB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008728 cydB1 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006475 cydB1 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0007192 cydB1 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0000639 cydB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006052 cydB1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0006725 cydB1 CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0000764 cydB CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0071564 cydB CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0086914 cydB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000636 cydB CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0000736 cydB CDS
Person Uncurated Go view Vibrio cholerae N16961 ADH-0001917 VC1843 CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0003035 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0008488 cydB CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0003712 cydB CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0002163 cydB CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003649 CDS
Automated Process Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236678 cydB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005499 cydB CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000730 cydB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005179 cydB CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002245 cydB CDS
Automated Process Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118914 cydB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008018 cydB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004829 cydB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007624 cydB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005405 cydB CDS
Automated Process Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032812 cydB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005523 cydB CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003465 cydB CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003099 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005981 cydB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0006873 cydB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001213 cydB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001445 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003529 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 819857 to 830996
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000711mngBCDSforward819793822426Upstream
AEC-0000712cydACDSforward823273824841Upstream
AEC-0000713cydBCDSforward824857825996Matches
AEC-0004058ybgTCDSforward826011826124Downstream
AEC-0000714ybgECDSforward826124826417Downstream
AEC-0000715ybgCCDSforward826567826971Downstream
AEC-0000716tolQCDSforward826968827660Downstream
AEC-0000717tolRCDSforward827664828092Downstream
AEC-0000718tolACDSforward828157829422Downstream
AEC-0000719tolBCDSforward829555830847Downstream
AEC-0000720palCDSforward830882831403Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948