Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000723 (pnuC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000723 showshow history
Names
pnuC ECDH10B_0818
Product
predicted nicotinamide mononucleotide transporter
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 834981 835700 720 240
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR006419 (IPR006419 Nicotinamide mononucleotide transporter PnuC) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name pnuC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002547
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0818 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product predicted nicotinamide mononucleotide transporter Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR006419 Nicotinamide mononucleotide transporter PnuC Protein Sequence Similarity - InterPro Domain: IPR006419
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002547 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002547
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR006419
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000187 pnuC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000503 pnuC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020545 pnuC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002356 pnuC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000193 pnuC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009120 pnuC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000769 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005764 pnuC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000657 pnuC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008824 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009504 pnuC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008849 PnuC CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076917 pnuC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007978 pnuC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009436 pnuC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000668 pnuC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005224 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001905 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009556 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008605 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005870 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008356 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005693 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009082 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009429 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010954 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006639 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008530 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007231 pnuC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024750 pnuC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009447 pnuC_1 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005484 pnuC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002547 pnuC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000758 pnuC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000828 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000773 pnuC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130688 pnuC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005430 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000750 pnuC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061633 pnuC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000801 pnuC CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0002670 pnuC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004109 pnuC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004971 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002291 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000906 pnuC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005126 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002384 pnuC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002309 pnuC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008685 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005249 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004606 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007212 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005167 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004375 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005191 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009299 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001998 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001986 pnuC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002780 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005478 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005880 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005005 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006028 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106845 pnuC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083835 pnuC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092827 pnuC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008712 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006459 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008462 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000652 pnuC CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006069 pnuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007971 pnuC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000778 pnuC CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071549 pnuC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0086901 pnuC CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000623 pnuC CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000754 pnuC CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002921 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008454 pnuC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002348 pnuC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003623 pnuC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003139 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236645 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005514 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000746 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005193 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002235 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118952 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008031 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004815 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003364 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007638 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005391 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032798 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005509 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003449 pnuC CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003082 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005967 pnuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006854 pnuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001231 pnuC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001466 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003507 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 829981 to 840700
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000719tolBCDSforward829555830847Upstream
AEC-0000720palCDSforward830882831403Upstream
AEC-0000721ybgFCDSforward831413832204Upstream
AEC-0004123lysTtRNAforward832369832444Upstream
AEC-0004124valTtRNAforward832580832655Upstream
AEC-0004125lysWtRNAforward832658832733Upstream
AEC-0004126valZtRNAforward832883832958Upstream
AEC-0004127lysYtRNAforward832962833037Upstream
AEC-0004128lysZtRNAforward833184833259Upstream
AEC-0004129lysQtRNAforward833392833467Upstream
AEC-0000722nadACDSforward833900834943Upstream
AEC-0000723pnuCCDSforward834981835700Matches
AEC-0000724zitBCDScomplement835697836638Overlaps Downstream
AEC-0000725ybgSCDScomplement836752837132Downstream
AEC-0000726aroGCDSforward837448838500Downstream
AEC-0000727gpmACDScomplement838658839410Downstream
AEC-0000728galMCDScomplement839612840652Downstream
AEC-0004427galKpseudogenecomplement840646841633(Interval #2) Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948