Escherichia coli K-12 DH10B
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000724 (zitB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000724 showshow history
Names
zitB ECDH10B_0819
Product
zinc efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 835697 836638 942 314
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002524 (IPR002524 Cation efflux protein) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 DH10B
Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name zitB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002549
Reference: Escherichia coli K-12 MG1655
Mar 2007
Person Approved locus tag ECDH10B_0819 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B
Feb 2008
Product
Person Approved product zinc efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12
Mar 2007
Protein Family
Automated Process Approved protein family IPR002524 Cation efflux protein Protein Sequence Similarity - InterPro Domain: IPR002524
Reference: Escherichia coli K-12 DH10B
Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002549 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002549
Reference: Escherichia coli K-12 MG1655
Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006812 cation transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 DH10B
Jul 2009
Automated Process Approved GO molecular function GO:0008324 cation transmembrane transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002524
Reference: Escherichia coli K-12 DH10B
Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001914 zitB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002078 zitB CDS
Ortholog
Person Uncurated Go view Dickeya dadantii 3937 ABF-0020546 zitB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002355 zitB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000192 zitB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0009119 zitB CDS
Automated Process Approved Go view Escherichia coli 536 (UPEC) AEF-0000770 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005763 zitB CDS
Automated Process Approved Go view Escherichia coli APEC O1 (APEC) AEG-0000658 ybgR CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008823 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0009503 zitB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008848 ZitB CDS
Person Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0081780 zitB pseudogene
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007979 zitB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0009437 zitB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000669 zitB CDS
Automated Process Approved Go view Escherichia coli E24377A (ETEC) ADO-0005225 zitB CDS
Person Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001906 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009557 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008606 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005871 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008357 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005694 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009081 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009430 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006640 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008917 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0008529 zitB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007232 zitB CDS
Automated Process Approved Go view Escherichia coli EDL933 (EHEC) ABH-0024751 zitB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009448 zitB CDS
Automated Process Approved Go view Escherichia coli HS ADR-0005485 zitB CDS
Person Approved Go view Escherichia coli K-12 MG1655 ABE-0002549 zitB CDS
Automated Process Approved Go view Escherichia coli K-12 W3110 ADY-0000759 zitB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000829 CDS
Automated Process Approved Go view Escherichia coli Sakai (EHEC) ACA-0130689 zitB CDS
Person Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005431 CDS
Automated Process Approved Go view Escherichia coli UTI89 (UPEC) AEA-0000751 CDS
Person Uncurated Go view Klebsiella pneumoniae subsp. pneumoniae MGH 78578 AEP-0000758 ybgR CDS
Person Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0061634 zitB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0000795 zitB CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004110 zitB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0004972 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002290 CDS
Automated Process Approved Go view Salmonella Choleraesuis SC-B67 ADB-0000907 zitB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005127 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002387 ybgR CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002312 ybgR CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008686 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005250 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004607 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007213 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005168 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004376 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005192 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0009298 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001997 CDS
Automated Process Approved Go view Salmonella Paratyphi A ATCC 9150 ADA-0001985 zitB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002779 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005479 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005879 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005006 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006029 CDS
Automated Process Approved Go view Salmonella Typhi CT18 ABX-0106846 zitB CDS
Automated Process Approved Go view Salmonella Typhi Ty2 ABS-0083834 zitB CDS
Automated Process Approved Go view Salmonella Typhimurium LT2 [T] ABU-0092829 zitB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008711 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006458 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008463 CDS
Automated Process Approved Go view Shigella boydii 227 ADV-0000653 ybgR CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0006070 zitB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0007972 zitB CDS
Automated Process Approved Go view Shigella dysenteriae 197 ADU-0000779 ybgR CDS
Automated Process Approved Go view Shigella flexneri 2457T ABQ-0071548 zitB CDS
Automated Process Approved Go view Shigella flexneri 301 ABT-0086900 zitB CDS
Automated Process Approved Go view Shigella flexneri 8401 BAG-0000622 ybgR CDS
Automated Process Approved Go view Shigella sonnei 046 ADD-0000755 zitB CDS
Automated Process Approved Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002920 CDS
Automated Process Approved Go view Yersinia enterocolitica 8081 BAH-0008449 CDS
Automated Process Approved Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002347 zitB CDS
Automated Process Approved Go view Yersinia intermedia ATCC 29909 [T] AEH-0003622 zitB CDS
Automated Process Approved Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003138 CDS
Automated Process Approved Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236638 zitB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005515 zitB CDS
Automated Process Approved Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000747 zitB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005194 zitB CDS
Automated Process Approved Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002234 CDS
Automated Process Approved Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0118960 zitB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008032 zitB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004814 zitB CDS
Automated Process Approved Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003363 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007639 zitB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005390 zitB CDS
Automated Process Approved Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032797 zitB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005508 zitB CDS
Automated Process Approved Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003448 zitB CDS
Automated Process Approved Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003081 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005966 zitB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP31758 ADS-0006853 zitB CDS
Automated Process Approved Go view Yersinia pseudotuberculosis IP32953 ACZ-0001232 zitB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001467 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003506 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 830697 to 841638
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000719tolBCDSforward829555830847Downstream
AEC-0000720palCDSforward830882831403Downstream
AEC-0000721ybgFCDSforward831413832204Downstream
AEC-0004123lysTtRNAforward832369832444Downstream
AEC-0004124valTtRNAforward832580832655Downstream
AEC-0004125lysWtRNAforward832658832733Downstream
AEC-0004126valZtRNAforward832883832958Downstream
AEC-0004127lysYtRNAforward832962833037Downstream
AEC-0004128lysZtRNAforward833184833259Downstream
AEC-0004129lysQtRNAforward833392833467Downstream
AEC-0000722nadACDSforward833900834943Downstream
AEC-0000723pnuCCDSforward834981835700Overlaps Downstream
AEC-0000724zitBCDScomplement835697836638Matches
AEC-0000725ybgSCDScomplement836752837132Upstream
AEC-0000726aroGCDSforward837448838500Upstream
AEC-0000727gpmACDScomplement838658839410Upstream
AEC-0000728galMCDScomplement839612840652Upstream
AEC-0004427galKpseudogenecomplement840646841633(Interval #2) Upstream
AEC-0000020IS2.2repeat_regioncomplement841632842962Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948