Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000746 (bioD) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000746 showshow history
Names
bioD ECDH10B_0846
Product
dethiobiotin synthetase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 865421 866098 678 226
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR002586 (IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain) Jul 2009
Automated Process Approved IPR004472 (IPR004472 Dethiobiotin synthase BioD) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0042242 cobyrinic acid a,c-diamide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004141 dethiobiotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name bioD Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002650
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0846 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product dethiobiotin synthetase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Protein Sequence Similarity - InterPro Domain: IPR002586
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR004472 Dethiobiotin synthase BioD Protein Sequence Similarity - InterPro Domain: IPR004472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002650 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002650
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0009236 cobalamin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0009102 biotin biosynthetic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0042242 cobyrinic acid a,c-diamide synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR002586
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004141 dethiobiotin synthase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR004472
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001535 bioD CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001316 bioD CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020212 bioD CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002332 bioD CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000108 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000799 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005733 bioD CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000683 bioD CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008773 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0008819 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076949 bioD CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000772 bioD CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005287 bioD CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001984 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009628 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008677 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005944 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005766 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009009 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0009043 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006713 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007305 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024820 bioD CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009476 bioD1_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005511 bioD1 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002650 bioD CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000785 bioD CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000855 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000800 bioD1 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130769 bioD CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005510 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000778 bioD CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063095 bioD CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004108 bioD CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003691 bioD CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004393 bioD CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005011 bioD CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002239 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000950 bioD CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005166 bioD CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002517 bioD CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002437 bioD CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008095 bioD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005289 bioD CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004646 bioD CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007246 bioD CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005207 bioD CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004415 bioD CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005231 bioD CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007756 bioD CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001967 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001955 bioD CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002735 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005518 bioD CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005839 bioD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005036 bioD CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006059 bioD CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106924 bioD CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083804 bioD CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092949 bioD CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008643 bioD CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006414 bioD CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000726 bioD CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007985 bioD1 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000933 bioD CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071769 bioD CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087085 bioD CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000804 bioD CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000817 bioD CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002399 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008380 bioD CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002324 bioD1 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003403 bioD CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002891 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0236596 bioD CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005538 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0001291 bioD CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005218 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002213 bioD CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119039 bioD CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0008058 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004789 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003002 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0007666 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005367 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032775 bioD CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005483 bioD2 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003422 bioD CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0003055 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0006331 bioD2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006831 bioD2 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001253 bioD CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001494 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003478 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 860421 to 871098
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000741ybhCCDScomplement859149860432Upstream
AEC-0004430attLAMmisc_featureforward860479860493Upstream
AEC-0000742ybhBCDScomplement860584861060Upstream
AEC-0004431bioACDScomplement861119862408Upstream
AEC-0000743bioBCDSforward862495863535Upstream
AEC-0000744bioFCDSforward863532864686Upstream
AEC-0000745bioCCDSforward864673865428Overlaps Upstream
AEC-0000746bioDCDSforward865421866098Matches
AEC-0000747uvrBCDSforward866677868698Downstream
AEC-0000748ybhKCDScomplement868890869798Downstream
AEC-0000749moaACDSforward870195871184Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948