Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000757 (ybhO) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000757 showshow history
Names
ybhO ECDH10B_0857
Product
cardiolipin synthase 2
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 875649 876890 1242 414
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001736 (IPR001736 Phospholipase D/Transphosphatidylase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ybhO Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002692
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0857 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product cardiolipin synthase 2 Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001736 Phospholipase D/Transphosphatidylase Protein Sequence Similarity - InterPro Domain: IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002692 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002692
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0008152 metabolic process GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001736
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002631 ybhO CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002647 clsB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020573 clsB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007616 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000810 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005722 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000693 ybhO CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008761 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007817 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0009847 YbhO CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076963 clsB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007843 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008251 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000783 ybhO CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005299 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0001996 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009639 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008688 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005955 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010119 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005777 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009800 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009517 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008516 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006724 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0009849 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007644 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007316 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024831 ybhO CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0009838 clsB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005522 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002692 clsB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000796 ybhO CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000868 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000811 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130780 ybhO CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005522 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000792 ybhO CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005025 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002226 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000965 ybhO CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005181 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002560 ybhO CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002480 ybhO CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008081 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005304 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004660 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007261 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005222 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004430 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005245 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007770 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001953 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001941 ybhO CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002717 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005532 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005824 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005049 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006072 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106947 ybhO CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083790 ybhO CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0092991 ybhO CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008629 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006398 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006310 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007974 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005634 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000915 ybhO CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071781 ybhO CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087096 ybhO CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000815 ybhO CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000828 ybhO CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 870649 to 881890
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000749moaACDSforward870195871184Downstream
AEC-0000750moaBCDSforward871206871718Downstream
AEC-0000751moaCCDSforward871721872206Downstream
AEC-0000752moaDCDSforward872199872444Downstream
AEC-0000753moaECDSforward872446872898Downstream
AEC-0000754ybhLCDSforward873035873739Downstream
AEC-0000755ybhMCDSforward873944874657Downstream
AEC-0000756ybhNCDScomplement874693875649Overlaps Downstream
AEC-0000757ybhOCDScomplement875649876890Matches
AEC-0000758ybhPCDScomplement876887877648Overlaps Upstream
AEC-0000759ybhQCDSforward877781878191Upstream
AEC-0000760ybhRCDScomplement878153879259Upstream
AEC-0000761ybhSCDScomplement879270880403Upstream
AEC-0000762ybhFCDScomplement880396882132Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948