Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000781 (rhtA) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000781 showshow history
Names
rhtA ECDH10B_0881
Product
threonine and homoserine efflux system
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 902361 903248 888 296
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000620 (IPR000620 EamA domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name rhtA Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002779
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0881 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product threonine and homoserine efflux system Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000620 EamA domain Protein Sequence Similarity - InterPro Domain: IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002779 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002779
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000620
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001857 rhtA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001732 rhtA CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0018912 rhtA CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002273 ybiF CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000074 rhtA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000834 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005695 rhtA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000720 ybiF CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008730 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007791 rhtA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006292 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0076990 rhtA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007818 rhtA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008226 rhtA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000807 rhtA CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005329 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002025 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009664 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008714 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0005980 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008104 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005802 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008935 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009543 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008542 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006750 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007619 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007341 rhtA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024857 rhtA CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008921 rhtA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005549 rhtA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002779 rhtA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000820 rhtA CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000893 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000836 rhtA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130804 rhtA CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005551 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000819 ybiF CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0063038 rhtA CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001624 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000719 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0004479 rhtA CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005048 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002204 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0000987 rhtA CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005202 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002624 ybiF CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002541 ybiF CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008059 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005326 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004682 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007283 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005253 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004461 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005268 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007800 CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002681 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005554 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005793 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005071 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006094 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0106995 rhtA CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083770 rhtA CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093058 rhtA CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008607 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006375 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006332 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000768 ybiF CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007946 rhtA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071811 rhtA CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087120 rhtA CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000841 ybiF CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000854 rhtA CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001121 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008184 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002259 rhtA CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001302 rhtA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002579 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0239843 rhtA CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005882 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0002415 rhtA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007882 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0000957 CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0123643 rhtA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0004652 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0005551 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003301 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006870 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0008309 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0031370 rhtA CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0008256 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0002533 rhtA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002302 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005819 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0005466 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0002631 rhtA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0003148 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0001885 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 897361 to 908248
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000776ybiOCDScomplement896406898631Downstream
AEC-0000777glnQCDScomplement898892899614Downstream
AEC-0000778glnPCDScomplement899611900270Downstream
AEC-0000779glnHCDScomplement900409901155Downstream
AEC-0000780dpsCDScomplement901559902062Downstream
AEC-0000781rhtACDScomplement902361903248Matches
AEC-0000782ompXCDSforward903601904116Upstream
AEC-0000783ybiPCDScomplement904165905748Upstream
AEC-0000785mntRCDSforward906334906801Upstream
AEC-0000786ybiRCDSforward906798907916Upstream
AEC-0000787ybiSCDScomplement907975908895Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948