Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000807 (dacC) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000807 showshow history
Names
dacC ECDH10B_0908
Product
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a)
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 933878 935080 1203 401
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012338 (IPR012338 Beta-lactamase/transpeptidase-like) Jul 2009
Automated Process Approved IPR015956 (IPR015956 Penicillin-binding protein, C-terminal domain superfamily) Jul 2009
Automated Process Approved IPR001967 (IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal) Jul 2009
Automated Process Approved IPR012907 (IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name dacC Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002860
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0908 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012338 Beta-lactamase/transpeptidase-like Protein Sequence Similarity - InterPro Domain: IPR012338
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal Protein Sequence Similarity - InterPro Domain: IPR001967
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015956 Penicillin-binding protein, C-terminal domain superfamily Protein Sequence Similarity - InterPro Domain: IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal Protein Sequence Similarity - InterPro Domain: IPR012907
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002860 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002860
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006508 proteolysis GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0008233 peptidase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR015956
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001767 dacC CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001683 dacC CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019836 dacC CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002255 dacC CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000042 dacC CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007669 dacC CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000860 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005669 dacC CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000747 dacC CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008696 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007762 dacC CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006324 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077015 dacC CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007791 dacC CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008199 dacC CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000834 dacC CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005356 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002056 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009694 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008744 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006010 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008133 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005832 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008964 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008572 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006780 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008877 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007589 dacC CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007371 dacC CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024889 dacC CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008946 dacC CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005578 dacC CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002860 dacC CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000847 dacC CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000921 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000865 dacC CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130832 dacC CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005581 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000844 dacC CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062954 dacC CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003690 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001881 dacC CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002685 dacC CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005077 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002174 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001021 dacC CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005240 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002736 dacC CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002653 dacC CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008022 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005360 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004718 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007317 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005281 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004488 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005304 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007837 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001911 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001899 dacC CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002641 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005590 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005754 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005104 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006127 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107056 dacC CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083747 dacC CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093146 dacC CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008566 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006338 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006368 CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007917 dacC CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005695 dacC CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000948 dacC CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087144 CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002110 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004462 dacC CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001267 dacC CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003324 dacC CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003193 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237277 dacC CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005660 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005429 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002064 dacC CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119645 dacC CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006188 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004606 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002535 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005263 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005153 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032605 dacC CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005302 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003194 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002851 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006645 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001423 dacC CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001717 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003249 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 928878 to 940080
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000802yliFCDSforward928486929814Upstream
AEC-0000803yliGCDScomplement929861931186Upstream
AEC-0000804bssRCDSforward931399931782Upstream
AEC-0000805yliICDSforward931893933008Upstream
AEC-0000806yliJCDScomplement933005933631Upstream
AEC-0000807dacCCDSforward933878935080Matches
AEC-0000808deoRCDScomplement935127935885Downstream
AEC-0000809ybjGCDScomplement935943936539Downstream
AEC-0000810cmrCDSforward936824938056Downstream
AEC-0000811ybjHCDScomplement938097938381Downstream
AEC-0000812ybjICDScomplement938467939282Downstream
AEC-0000813ybjJCDScomplement939282940490Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948