Escherichia coli K-12 DH10B
About ASAP Data Release Policy University of Wisconsin—Madison
Home    Overview    Annotations    BLAST    Downloads    Comparative Genomics    Experiments    Strains    Help (this script)    User: guest  / Log On   
Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000809 (ybjG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000809 showshow history
Names
ybjG ECDH10B_0910
Product
undecaprenyl pyrophosphate phosphatase
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 935943 936539 597 199
Sequence

Get full DNA or protein sequence

View sequence with flanking regions: bases upstream and bases downstream

Context

Browse sequence in GaPP

You last hovered over feature (none)
Pre-Run Search Results
Search Database View Results
InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000326 (IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase) Jul 2009
Automated Process Approved IPR016118 (IPR016118 (DEPRECATED) Phosphatidic acid phosphatase/chloroperoxidase, N-terminal) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name ybjG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002865
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0910 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product undecaprenyl pyrophosphate phosphatase Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Protein Sequence Similarity - InterPro Domain: IPR000326
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR016118 (DEPRECATED) Phosphatidic acid phosphatase/chloroperoxidase, N-terminal Protein Sequence Similarity - InterPro Domain: IPR016118
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002865 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002865
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000326
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002055 ybjG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001958 ybjG CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002253 ybjG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000040 CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007671 CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000862 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005667 CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000750 ybjG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008694 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007760 CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006326 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077017 ybjG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007789 CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008197 CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000836 ybjG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005358 CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002058 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009696 CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008746 CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006012 CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008135 CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005834 CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008966 CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009576 CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008574 CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006782 CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008875 CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007587 CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007373 CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024891 ybjG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008948 ybjG CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005580 CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002865 ybjG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000849 ybjG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000923 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000867 CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130834 ybjG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005583 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000846 ybjG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005079 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002172 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001023 ybjG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005242 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002744 ybjG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002661 ybjG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008020 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005362 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004720 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007319 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005283 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004490 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005306 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007839 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001909 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001897 ybjG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002639 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005592 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005752 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005106 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006129 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107061 ybjG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083745 ybjG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093151 ybjG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008564 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006336 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006370 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000805 ybjG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007915 CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005697 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000950 ybjG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071844 ybjG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087149 ybjG CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000871 ybjG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000889 ybjG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002115 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004477 CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001272 ybjG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003319 ybjG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003198 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237251 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005668 CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000755 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005436 CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002060 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119665 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006195 CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004600 CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0002531 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005256 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005146 CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032600 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005296 CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003190 ybjG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002847 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005956 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006637 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001427 ybjG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001722 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003245 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 930943 to 941539
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000803yliGCDScomplement929861931186Downstream
AEC-0000804bssRCDSforward931399931782Downstream
AEC-0000805yliICDSforward931893933008Downstream
AEC-0000806yliJCDScomplement933005933631Downstream
AEC-0000807dacCCDSforward933878935080Downstream
AEC-0000808deoRCDScomplement935127935885Downstream
AEC-0000809ybjGCDScomplement935943936539Matches
AEC-0000810cmrCDSforward936824938056Upstream
AEC-0000811ybjHCDScomplement938097938381Upstream
AEC-0000812ybjICDScomplement938467939282Upstream
AEC-0000813ybjJCDScomplement939282940490Upstream
AEC-0000814ybjKCDSforward940574941110Upstream
AEC-0004245rybBncRNAcomplement941127941205Upstream
AEC-0000815ybjLCDScomplement941285942970Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948