Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000810 (cmr) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000810 showshow history
Names
cmr ECDH10B_0911
Product
multidrug efflux system protein
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 936824 938056 1233 411
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR016196 (IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter) Jul 2009
Automated Process Approved IPR011701 (IPR011701 Major facilitator superfamily) Jul 2009
Automated Process Approved IPR005829 (IPR005829 Sugar transporter, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name cmr Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002871
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0911 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product multidrug efflux system protein Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR016196 (DEPRECATED) Major facilitator superfamily domain, general substrate transporter Protein Sequence Similarity - InterPro Domain: IPR016196
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005829 Sugar transporter, conserved site Protein Sequence Similarity - InterPro Domain: IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011701 Major facilitator superfamily Protein Sequence Similarity - InterPro Domain: IPR011701
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002871 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002871
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005829
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001912 mdfA CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001968 mdfA CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0001555 CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000038 mdfA CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007672 mdfA CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000863 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005666 mdfA CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000751 cmr CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008693 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007759 mdfA CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006327 MdfA CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077018 mdfA CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007788 mdfA CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008196 mdfA CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000837 cmr CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005360 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009697 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008747 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006013 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008136 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005835 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008967 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009577 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008575 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006783 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008874 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007586 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007374 mdfA CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024892 cmr CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0008949 mdfA CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005582 mdfA CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002871 mdfA CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000850 cmr CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000924 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000868 mdfA CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130835 cmr CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005585 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000847 cmr CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005080 CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002171 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001024 cmr CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005243 CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002748 mdfA CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002664 mdfA CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008019 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005363 CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004721 CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007320 CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005284 CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004491 CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005307 CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007840 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001908 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001896 cmr CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002638 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005593 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005751 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005107 CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006130 CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107063 cmr CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083744 cmr CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093155 cmr CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008563 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006335 CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006371 CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000806 cmr CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005698 mdfA CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071845 cmr CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087150 cmr CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000872 cmr CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000171 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0011905 cmr CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002368 cmr CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002117 mdfA CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002997 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0243794 cmr CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0007883 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0003635 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0007249 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0003355 cmr CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0128976 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0005813 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0008910 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003734 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0006162 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0006695 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0033867 cmr CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0006706 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0004442 mdfA CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0000055 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0004745 mdfA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0008149 mdfA CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0004056 cmr CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0000010 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0000057 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 931824 to 943056
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000805yliICDSforward931893933008Upstream
AEC-0000806yliJCDScomplement933005933631Upstream
AEC-0000807dacCCDSforward933878935080Upstream
AEC-0000808deoRCDScomplement935127935885Upstream
AEC-0000809ybjGCDScomplement935943936539Upstream
AEC-0000810cmrCDSforward936824938056Matches
AEC-0000811ybjHCDScomplement938097938381Downstream
AEC-0000812ybjICDScomplement938467939282Downstream
AEC-0000813ybjJCDScomplement939282940490Downstream
AEC-0000814ybjKCDSforward940574941110Downstream
AEC-0004245rybBncRNAcomplement941127941205Downstream
AEC-0000815ybjLCDScomplement941285942970Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948