Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000823 (potG) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000823 showshow history
Names
potG ECDH10B_0925
Product
putrescine transporter subunit: ATP-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome forward 948142 949275 1134 378
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR008995 (IPR008995 Molybdate/tungstate binding, C-terminal) Jul 2009
Automated Process Approved IPR003439 (IPR003439 ABC transporter-like) Jul 2009
Automated Process Approved IPR013611 (IPR013611 Transport-associated OB, type 2) Jul 2009
Automated Process Approved IPR003593 (IPR003593 AAA+ ATPase domain) Jul 2009
Automated Process Approved IPR005893 (IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0015846 polyamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015417 ABC-type polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name potG Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002915
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0925 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product putrescine transporter subunit: ATP-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR008995 Molybdate/tungstate binding, C-terminal Protein Sequence Similarity - InterPro Domain: IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003439 ABC transporter-like Protein Sequence Similarity - InterPro Domain: IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013611 Transport-associated OB, type 2 Protein Sequence Similarity - InterPro Domain: IPR013611
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR003593 AAA+ ATPase domain Protein Sequence Similarity - InterPro Domain: IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit Protein Sequence Similarity - InterPro Domain: IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002915 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002915
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0015846 polyamine transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0015417 ABC-type polyamine transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005893
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005524 ATP binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016820 (DEPRECATED) hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR008995
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016887 ATPase GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003439
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000166 nucleotide binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0017111 nucleoside-triphosphatase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR003593
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001834 potG CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001945 potG CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0019816 potG CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002245 potG CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0000024 potG CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007701 potG CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000876 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005651 potG CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000764 potG CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008627 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007745 potG CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006341 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077079 potG CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007773 potG CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008181 potG CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000898 potG CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005373 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002073 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009713 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008763 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006029 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008152 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005851 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008983 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009592 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008591 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006799 potG CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008858 potG CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007570 potG CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007388 potG CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024905 potG CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007098 potA_3 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005637 potG CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002915 potG CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000864 potG CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000937 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000882 potG CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130848 potG CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005598 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000860 potG CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062944 potG CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001546 potG CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0001876 potG CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002034 potG CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005093 potG CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002158 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001036 potG CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005256 potG CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002784 potG CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002700 potG CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0008006 potG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005376 potG CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004734 potG CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007333 potG CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005297 potG CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004504 potG CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005320 potG CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007853 potG CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001896 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001884 potG CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002624 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005606 potG CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005738 potG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005120 potG CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006143 potG CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107084 potG CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083732 potG CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093191 potG CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008550 CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006322 potG CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006384 potG CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000862 potG CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007887 potG CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0000833 potG CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071858 potG CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087164 potG CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000903 potG CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002136 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004500 potG CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001279 potG CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0003312 potG CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003205 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237224 potG CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005676 potG CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000763 potG CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005444 potG CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0002052 potG CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119704 potG CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006203 potG CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004593 potG CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003916 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0005248 potG CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005137 potG CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032590 potG CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005287 potG CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003182 potG CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002837 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005948 potG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006629 potG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001434 potG CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001730 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003237 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 943142 to 954275
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000816ybjMCDSforward943240943617Upstream
AEC-0000817grxACDScomplement943647943904Upstream
AEC-0000818ybjCCDSforward944064944351Upstream
AEC-0000819nfsACDSforward944335945057Upstream
AEC-0000820rimKCDSforward945118946020Upstream
AEC-0000821ybjNCDSforward946108946584Upstream
AEC-0000822potFCDSforward946935948047Upstream
AEC-0000823potGCDSforward948142949275Matches
AEC-0000824potHCDSforward949285950238Downstream
AEC-0000825potICDSforward950235951080Downstream
AEC-0000826ybjOCDSforward951140951628Downstream
AEC-0000827rumBCDSforward951669952796Downstream
AEC-0000828artJCDScomplement952995953726Downstream
AEC-0000829artMCDScomplement954017954685Downstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948