Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000828 (artJ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000828 showshow history
Names
artJ ECDH10B_0930
Product
arginine transporter subunit; periplasmic-binding component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 952995 953726 732 244
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR001638 (IPR001638 Solute-binding protein family 3/N-terminal domain of MltF) Jul 2009
Automated Process Approved IPR015683 (IPR015683 (DEPRECATED) Glutamate receptor-related) Jul 2009
Automated Process Approved IPR001320 (IPR001320 Ionotropic glutamate receptor) Jul 2009
Automated Process Approved IPR005768 (IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005234 extracellularly glutamate-gated ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004970 ionotropic glutamate receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name artJ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002927
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0930 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Uncurated product arginine transporter subunit; periplasmic-binding component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Protein Sequence Similarity - InterPro Domain: IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR015683 (DEPRECATED) Glutamate receptor-related Protein Sequence Similarity - InterPro Domain: IPR015683
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005768 Specific amino acids and opine-binding periplasmic protein, ABC transporter Protein Sequence Similarity - InterPro Domain: IPR005768
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR001320 Ionotropic glutamate receptor Protein Sequence Similarity - InterPro Domain: IPR001320
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002927 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002927
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0030288 outer membrane-bounded periplasmic space GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001638
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005234 extracellularly glutamate-gated ion channel activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004970 ionotropic glutamate receptor activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR001320
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002085 artJ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002035 artJ CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0046563 artJ CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002241 artJ CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004778 artJ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007706 artJ CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000769 artJ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008621 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007740 artJ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006346 pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077084 artJ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007768 artJ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008176 artJ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000903 artJ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005379 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002082 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009721 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008771 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006037 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008160 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005859 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008991 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009602 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008599 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006807 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008850 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007562 artJ CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007396 artJ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024914 artJ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007103 artJ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005643 artJ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002927 artJ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000869 artJ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000942 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000887 artJ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130856 artJ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005607 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000865 artJ CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062939 artJ CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0004528 artJ CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0000696 artJ CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002029 artJ CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005102 artJ CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002149 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001044 artJ CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005264 artJ CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002813 artJ CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002725 artJ CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007998 artJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005386 artJ CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004743 artJ CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007343 artJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005305 artJ CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004512 artJ CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005328 artJ CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007862 artJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001887 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001875 artJ CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002614 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005615 artJ CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005728 artJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005130 artJ CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006153 artJ CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107103 artJ CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083723 artJ CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093214 artJ CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008541 artJ CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006314 artJ CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006392 artJ CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000867 artJ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007882 artJ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005721 artJ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071864 artJ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087169 artJ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000890 artJ CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000908 artJ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0002141 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004522 artJ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001284 artJ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001014 artJ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0003210 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237199 artJ CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005681 artJ CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000768 CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005451 artJ CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006208 artJ CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003908 CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005132 artJ CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032585 artJ CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003176 CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002831 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005943 artJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006624 artJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001439 artJ CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001735 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003231 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 947995 to 958726
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000822potFCDSforward946935948047Downstream
AEC-0000823potGCDSforward948142949275Downstream
AEC-0000824potHCDSforward949285950238Downstream
AEC-0000825potICDSforward950235951080Downstream
AEC-0000826ybjOCDSforward951140951628Downstream
AEC-0000827rumBCDSforward951669952796Downstream
AEC-0000828artJCDScomplement952995953726Matches
AEC-0000829artMCDScomplement954017954685Upstream
AEC-0000830artQCDScomplement954685955401Upstream
AEC-0000831artICDScomplement955408956139Upstream
AEC-0000832artPCDScomplement956157956885Upstream
AEC-0000833ybjPCDScomplement957103957618Upstream
AEC-0000834ybjQCDSforward957744958067Upstream
AEC-0000835ybjRCDSforward958064958894Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948