Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000829 (artM) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000829 showshow history
Names
artM ECDH10B_0931
Product
arginine transporter subunit; membrane component of ABC superfamily
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 954017 954685 669 223
Sequence

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Context

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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000515 (IPR000515 ABC transporter type 1, transmembrane domain MetI-like) Jul 2009
Automated Process Approved IPR010065 (IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name artM Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002931
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0931 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product arginine transporter subunit; membrane component of ABC superfamily Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000515 ABC transporter type 1, transmembrane domain MetI-like Protein Sequence Similarity - InterPro Domain: IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain Protein Sequence Similarity - InterPro Domain: IPR010065
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002931 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002931
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0009276 Gram-negative-bacterium-type cell wall GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR010065
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000515
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0001223 artM CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0001336 artM CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0015263 artM CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002240 artM CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004777 artM CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007707 artM CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000883 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005644 artM CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000770 artM CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008620 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007739 artM CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006347 ArtM CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077085 artM CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007767 artM CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008175 artM CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000904 artM CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005380 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002083 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009723 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008773 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006039 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008162 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005861 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0008993 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009604 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008601 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006809 artM CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008848 artM CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007560 artM CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007398 artM CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024915 artM CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007104 artM_2 CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005644 artM CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002931 artM CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000870 artM CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000943 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000888 artM CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130857 artM CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005608 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000866 artM CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062938 artM CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0001491 artM CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003964 artM CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002028 artM CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005103 artM CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002148 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001045 artM CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005265 artM CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002817 artM CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002728 artM CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007997 artM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005387 artM CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004744 artM CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007344 artM CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005306 artM CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004513 artM CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005329 artM CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007863 artM CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001886 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001874 artM CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002613 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005616 artM CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005727 artM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005131 artM CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006154 artM CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107106 artM CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083722 artM CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093217 artM CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008539 artM CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006313 artM CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006393 artM CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000868 artM CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007881 artM CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005722 artM CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002769 artM CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071866 artM CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087170 artM CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000891 artM CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000909 artM CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001464 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004524 artM CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001286 artM_3 CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001009 artM CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000591 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237172 artM CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005692 artM CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000782 artM CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005464 artM CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001970 artM CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119779 artM CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006221 artM CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004573 artM CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0003899 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008355 artM CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005119 artM CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032573 artM CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005267 artM CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003164 artM CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002817 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005928 artM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006613 artM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001447 artM CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001750 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003216 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 949017 to 959685
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000823potGCDSforward948142949275Downstream
AEC-0000824potHCDSforward949285950238Downstream
AEC-0000825potICDSforward950235951080Downstream
AEC-0000826ybjOCDSforward951140951628Downstream
AEC-0000827rumBCDSforward951669952796Downstream
AEC-0000828artJCDScomplement952995953726Downstream
AEC-0000829artMCDScomplement954017954685Matches
AEC-0000830artQCDScomplement954685955401Overlaps Upstream
AEC-0000831artICDScomplement955408956139Upstream
AEC-0000832artPCDScomplement956157956885Upstream
AEC-0000833ybjPCDScomplement957103957618Upstream
AEC-0000834ybjQCDSforward957744958067Upstream
AEC-0000835ybjRCDSforward958064958894Upstream
AEC-0000836ybjSCDScomplement958891959904Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948