Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000839 (poxB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000839 showshow history
Names
poxB ECDH10B_0941
Product
pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 962482 964200 1719 573
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR012001 (IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain) Jul 2009
Automated Process Approved IPR012000 (IPR012000 Thiamine pyrophosphate enzyme, central domain) Jul 2009
Automated Process Approved IPR011766 (IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding) Jul 2009
Automated Process Approved IPR000399 (IPR000399 TPP-binding enzyme, conserved site) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000399
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name poxB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002958
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0941 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product pyruvate dehydrogenase (pyruvate oxidase), thiamin-dependent, FAD-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain Protein Sequence Similarity - InterPro Domain: IPR012001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012000 Thiamine pyrophosphate enzyme, central domain Protein Sequence Similarity - InterPro Domain: IPR012000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding Protein Sequence Similarity - InterPro Domain: IPR011766
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000399 TPP-binding enzyme, conserved site Protein Sequence Similarity - InterPro Domain: IPR000399
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002958 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002958
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO molecular function GO:0016740 transferase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000399
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0000287 magnesium ion binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012000
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0030976 thiamine pyrophosphate binding GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012001
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0003824 catalytic activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR011766
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0002047 poxB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002009 poxB CDS
Ortholog
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002233 poxB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004767 poxB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007717 poxB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000893 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005634 poxB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000779 poxB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008606 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007729 poxB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0006357 poxB pseudogene
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077095 poxB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0007757 poxB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008164 poxB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000914 poxB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005390 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002094 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009734 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008784 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0006050 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0008173 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005872 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0009004 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009615 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008612 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0006820 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008837 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0007549 poxB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0007409 poxB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024929 poxB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007114 poxB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005654 poxB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002958 poxB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000880 poxB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000953 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0000899 poxB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130870 poxB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005620 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000876 poxB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005113 poxB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002132 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001056 poxB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005275 poxB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002849 poxB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002759 poxB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007987 poxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005397 poxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004754 poxB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007354 poxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005316 poxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004523 poxB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005339 poxB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007873 poxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001876 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001864 poxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002602 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005626 poxB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005717 poxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005141 poxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006164 poxB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107128 poxB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083712 poxB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093351 poxB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008529 poxB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0006303 poxB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0006403 poxB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000877 poxB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007871 poxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005734 poxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002751 poxB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071878 poxB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087181 poxB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000905 poxB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000920 poxB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001454 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004553 poxB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001297 poxB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0001000 poxB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000601 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237156 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005701 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000797 poxB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005473 poxB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001979 poxB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119808 poxB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006230 poxB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004564 poxB CDS
Automated Process Uncurated Go view Yersinia pestis FV-1 (biovar Orientalis) BAK-0000566 CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008346 poxB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005110 poxB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032562 poxB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005258 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003148 poxB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002803 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005919 poxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006604 poxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001456 poxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001763 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003202 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 957482 to 969200
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000833ybjPCDScomplement957103957618Downstream
AEC-0000834ybjQCDSforward957744958067Downstream
AEC-0000835ybjRCDSforward958064958894Downstream
AEC-0000836ybjSCDScomplement958891959904Downstream
AEC-0000837ybjTCDScomplement960003961433Downstream
AEC-0000838ltaECDScomplement961444962445Downstream
AEC-0000839poxBCDScomplement962482964200Matches
AEC-0000840hcrCDScomplement964333965301Upstream
AEC-0000841hcpCDScomplement965313966965Upstream
AEC-0000842ybjECDScomplement967109968008Upstream
AEC-0000843aqpZCDScomplement968503969198Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948