Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000843 (aqpZ) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000843 showshow history
Names
aqpZ ECDH10B_0945
Product
aquaporin
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 968503 969198 696 232
Sequence

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Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000425 (IPR000425 Major intrinsic protein) Jul 2009
Automated Process Approved IPR012269 (IPR012269 (DEPRECATED) Aquaporin) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name aqpZ Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002976
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0945 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product aquaporin Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000425 Major intrinsic protein Protein Sequence Similarity - InterPro Domain: IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR012269 (DEPRECATED) Aquaporin Protein Sequence Similarity - InterPro Domain: IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0002976 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0002976
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0006810 transport GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016020 membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0016021 integral component of membrane GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR012269
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0005215 transporter activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000425
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0003001 aqpZ CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0002772 aqpZ CDS
Ortholog
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004761 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007945 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000897 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005630 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000783 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008601 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0008003 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007860 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077100 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010612 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008476 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000918 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005394 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0004948 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009738 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008788 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010290 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010583 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005876 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010447 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4206 (EHEC) BAW-0009619 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0010711 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009265 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0010649 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0010424 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0024934 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007118 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005658 aqpZ CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0002976 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000884 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000957 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002284 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130874 aqpZ CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005624 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000880 aqpZ CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000881 aqpZ CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007867 aqpZ CDS
Automated Process Uncurated Go view Shigella dysenteriae 1012 BAA-0005738 CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002747 aqpZ CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071885 aqpZ CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087187 aqpZ CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000909 aqpZ CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0000743 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0008227 aqpZ CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0002276 aqpZ CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0002950 aqpZ CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0002342 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 963503 to 974198
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000839poxBCDScomplement962482964200Downstream
AEC-0000840hcrCDScomplement964333965301Downstream
AEC-0000841hcpCDScomplement965313966965Downstream
AEC-0000842ybjECDScomplement967109968008Downstream
AEC-0000843aqpZCDScomplement968503969198Matches
AEC-0004432ybjDCDSforward969624971282Upstream
AEC-0000844ybjXCDScomplement971279972271Upstream
AEC-0000845macACDSforward972386973501Upstream
AEC-0000846macBCDSforward973498975444Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948