Escherichia coli K-12 DH10B
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Working With: Genome: Escherichia coli K-12 DH10B Version: 10

AEC-0000854 (trxB) - Escherichia coli K-12 DH10B - Feature Annotation

ASAP ID
AEC-0000854 showshow history
Names
trxB ECDH10B_0958
Product
thioredoxin reductase, FAD/NAD(P)-binding
Type
CDS
Location
# Contig Strand Left Right Length (b.p.) Length (a.a.)
1 Chromosome complement 984236 985201 966 322
Sequence

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View sequence with flanking regions: bases upstream and bases downstream

Context

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Pre-Run Search Results
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InterProScan
BLASTP
Protein Families to toptop
Author Approval Family Annotated
Automated Process Approved IPR000759 (IPR000759 (DEPRECATED) Adrenodoxin reductase) Jul 2009
Automated Process Approved IPR013027 (IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase) Jul 2009
Automated Process Approved IPR000103 (IPR000103 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, class-II) Jul 2009
Automated Process Approved IPR008255 (IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site) Jul 2009
Automated Process Approved IPR005982 (IPR005982 Thioredoxin reductase) Jul 2009
Protein Domains to toptop
Internal error getting result
Gene Ontology to toptop
Author Approval Type Annotation Evidence Annotated
Automated Process Approved GO biological process GO:0019430 removal of superoxide radicals GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004791 thioredoxin-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000103
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Annotations to toptop
Author Approval Type Annotation Evidence Annotated
Nomenclature
Person Approved name trxB Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003018
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Person Approved locus tag ECDH10B_0958 Unique Identifier - Origin: Guy Plunkett III, guy@genome.wisc.edu
Reference: Escherichia coli K-12 DH10B 		Feb 2008
Product
Person Approved product thioredoxin reductase, FAD/NAD(P)-binding Published Annotation - PubMed ID: 16397293
Reference: Escherichia coli K-12 		Mar 2007
Protein Family
Automated Process Approved protein family IPR000759 (DEPRECATED) Adrenodoxin reductase Protein Sequence Similarity - InterPro Domain: IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR013027 (DEPRECATED) FAD-dependent pyridine nucleotide-disulphide oxidoreductase Protein Sequence Similarity - InterPro Domain: IPR013027
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site Protein Sequence Similarity - InterPro Domain: IPR008255
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR005982 Thioredoxin reductase Protein Sequence Similarity - InterPro Domain: IPR005982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved protein family IPR000103 (DEPRECATED) Pyridine nucleotide-disulphide oxidoreductase, class-II Protein Sequence Similarity - InterPro Domain: IPR000103
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Other
Person Approved comment 100% identical to E. coli K-12 MG1655 feature ABE-0003018 Nucleotide Sequence Similarity - ASAP FeatureID: ABE-0003018
Reference: Escherichia coli K-12 MG1655 		Mar 2007
Gene Ontology
Automated Process Approved GO biological process GO:0019430 removal of superoxide radicals GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO cellular component GO:0005737 cytoplasm GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0016491 oxidoreductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000103
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0004791 thioredoxin-disulfide reductase activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR005982
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Automated Process Approved GO molecular function GO:0009055 electron transfer activity GO Inferred from Electronic Annotation - Database Name:Identifier: INTERPRO:IPR000759
Reference: Escherichia coli K-12 DH10B 		Jul 2009
Comparative to toptop
Author Approval Details Genome Feature Name Type
Member
Automated Process Uncurated Go view OrthoMCL (205 gammaproteobacteria) APP-0000167 trxB CDS
Automated Process Uncurated Go view OrthoMCL (307 Enterobacteriaceae) ATM-0000156 trxB CDS
Ortholog
Automated Process Uncurated Go view Dickeya dadantii 3937 ABF-0020039 trxB CDS
Automated Process Uncurated Go view Erwinia tasmaniensis Et1/99 [T] AFI-0002225 trxB CDS
Automated Process Uncurated Go view Escherichia albertii TW07627 AFX-0004748 trxB CDS
Automated Process Uncurated Go view Escherichia coli 101-1 (EAEC) BAB-0007958 trxB CDS
Automated Process Uncurated Go view Escherichia coli 536 (UPEC) AEF-0000910 CDS
Automated Process Uncurated Go view Escherichia coli 53638 (EIEC) ADP-0005600 trxB CDS
Automated Process Uncurated Go view Escherichia coli APEC O1 (APEC) AEG-0000801 trxB CDS
Automated Process Uncurated Go view Escherichia coli ATCC 8739 AEM-0008583 CDS
Automated Process Uncurated Go view Escherichia coli B171 (EPEC) ADN-0007990 trxB CDS
Automated Process Uncurated Go view Escherichia coli B7A (ETEC) ADK-0007883 CDS
Automated Process Uncurated Go view Escherichia coli CFT073 (UPEC) ABR-0077117 trxB CDS
Automated Process Uncurated Go view Escherichia coli E110019 (EPEC) ADM-0010651 trxB CDS
Automated Process Uncurated Go view Escherichia coli E22 (EPEC) ADL-0008463 trxB CDS
Automated Process Uncurated Go view Escherichia coli E2348/69 (EPEC) BCI-0000931 trxB CDS
Automated Process Uncurated Go view Escherichia coli E24377A (ETEC) ADO-0005408 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4024 (EHEC) BBI-0002190 CDS
Automated Process Uncurated Go view Escherichia coli EC4042 (EHEC) BBA-0009752 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4045 (EHEC) BBB-0008801 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4076 (EHEC) BAZ-0010303 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4113 (EHEC) BAY-0010250 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4115 (EHEC) BAS-0005890 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4196 (EHEC) BAX-0010433 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4401 (EHEC) BAV-0008908 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4486 (EHEC) BAU-0009297 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC4501 (EHEC) BAT-0008563 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC508 (EHEC) BBJ-0009119 trxB CDS
Automated Process Uncurated Go view Escherichia coli EC869 (EHEC) BBC-0009488 trxB CDS
Automated Process Uncurated Go view Escherichia coli EDL933 (EHEC) ABH-0025054 trxB CDS
Automated Process Uncurated Go view Escherichia coli F11 (UPEC) ADQ-0007148 trxB CDS
Automated Process Uncurated Go view Escherichia coli HS ADR-0005671 trxB CDS
Person Uncurated Go view Escherichia coli K-12 MG1655 ABE-0003018 trxB CDS
Automated Process Uncurated Go view Escherichia coli K-12 W3110 ADY-0000897 trxB CDS
Automated Process Uncurated Go view Escherichia coli SE11 AFS-0000971 CDS
Automated Process Uncurated Go view Escherichia coli SMS-3-5 AFT-0002232 trxB CDS
Automated Process Uncurated Go view Escherichia coli Sakai (EHEC) ACA-0130887 trxB CDS
Automated Process Uncurated Go view Escherichia coli TW14588 (EHEC) BBK-0005651 CDS
Automated Process Uncurated Go view Escherichia coli UTI89 (UPEC) AEA-0000905 trxB CDS
Automated Process Uncurated Go view Pectobacterium atrosepticum SCRI1043 ABL-0062917 trxB CDS
Automated Process Uncurated Go view Pectobacterium brasiliensis 1692 AED-0003680 CDS
Automated Process Uncurated Go view Pectobacterium carotovorum WPP14 ADT-0003963 CDS
Automated Process Uncurated Go view Pectobacterium parmentieri WPP163 AFJ-0002009 trxB CDS
Automated Process Uncurated Go view Salmonella Agona SL483 BBX-0005141 trxB CDS
Automated Process Uncurated Go view Salmonella Arizonae CDC 346-86 BCD-0002107 CDS
Automated Process Uncurated Go view Salmonella Choleraesuis SC-B67 ADB-0001080 trxB CDS
Automated Process Uncurated Go view Salmonella Dublin CT_02021853 BCB-0005296 trxB CDS
Automated Process Uncurated Go view Salmonella Enteritidis P125109 BCF-0002920 trxB CDS
Automated Process Uncurated Go view Salmonella Gallinarum 287/91 BCG-0002827 trxB CDS
Automated Process Uncurated Go view Salmonella Hadar RI_05P066 BBT-0007965 trxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL476 BBV-0005421 trxB CDS
Automated Process Uncurated Go view Salmonella Heidelberg SL486 BBW-0004778 trxB CDS
Automated Process Uncurated Go view Salmonella Javiana GA_MM04042433 BCA-0007375 trxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CDC 191 BBZ-0005360 trxB CDS
Automated Process Uncurated Go view Salmonella Kentucky CVM29188 BBP-0004569 trxB CDS
Automated Process Uncurated Go view Salmonella Newport SL254 BBQ-0005360 trxB CDS
Automated Process Uncurated Go view Salmonella Newport SL317 BBR-0007895 trxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi A AKU_12601 BCH-0001852 CDS
Automated Process Uncurated Go view Salmonella Paratyphi A ATCC 9150 ADA-0001840 trxB CDS
Automated Process Uncurated Go view Salmonella Paratyphi B SPB7 BCC-0002577 CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA23 BBN-0005648 trxB CDS
Automated Process Uncurated Go view Salmonella Saintpaul SARA29 BBM-0005697 trxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund CVM19633 BBO-0005161 trxB CDS
Automated Process Uncurated Go view Salmonella Schwarzengrund SL480 BBY-0006184 trxB CDS
Automated Process Uncurated Go view Salmonella Typhi CT18 ABX-0107171 trxB CDS
Automated Process Uncurated Go view Salmonella Typhi Ty2 ABS-0083690 trxB CDS
Automated Process Uncurated Go view Salmonella Typhimurium LT2 [T] ABU-0093412 trxB CDS
Automated Process Uncurated Go view Salmonella Virchow SL491 BBS-0008506 trxB CDS
Automated Process Uncurated Go view Salmonella Weltevreden SL484 BBU-0009073 trxB CDS
Automated Process Uncurated Go view Salmonella enterica CVM23701 BBL-0008744 trxB CDS
Automated Process Uncurated Go view Shigella boydii 227 ADV-0000894 trxB CDS
Automated Process Uncurated Go view Shigella boydii BS512 ADJ-0007852 trxB CDS
Automated Process Uncurated Go view Shigella dysenteriae 197 ADU-0002731 trxB CDS
Automated Process Uncurated Go view Shigella flexneri 2457T ABQ-0071901 trxB CDS
Automated Process Uncurated Go view Shigella flexneri 301 ABT-0087203 trxB CDS
Automated Process Uncurated Go view Shigella flexneri 8401 BAG-0000926 trxB CDS
Automated Process Uncurated Go view Shigella sonnei 046 ADD-0000956 trxB CDS
Automated Process Uncurated Go view Yersinia bercovieri ATCC 43970 [T] AEK-0001438 CDS
Automated Process Uncurated Go view Yersinia enterocolitica 8081 BAH-0004617 trxB CDS
Automated Process Uncurated Go view Yersinia frederiksenii ATCC 33641 [T] AEI-0001313 trxB CDS
Automated Process Uncurated Go view Yersinia intermedia ATCC 29909 [T] AEH-0000985 trxB CDS
Automated Process Uncurated Go view Yersinia mollaretii ATCC 43969 [T] AEJ-0000617 CDS
Automated Process Uncurated Go view Yersinia pestis 91001 (biovar Microtus) ACQ-0237106 trxB CDS
Automated Process Uncurated Go view Yersinia pestis Angola (biovar Pestoides) ADI-0005723 trxB CDS
Automated Process Uncurated Go view Yersinia pestis Antiqua (biovar Antiqua) BAE-0000816 trxB CDS
Automated Process Uncurated Go view Yersinia pestis B42003004 (biovar Antiqua) BAL-0005494 trxB CDS
Automated Process Uncurated Go view Yersinia pestis CA88-4125 (biovar Orientalis) BAF-0001995 trxB CDS
Automated Process Uncurated Go view Yersinia pestis CO92 (biovar Orientalis) ABY-0119879 trxB CDS
Automated Process Uncurated Go view Yersinia pestis E1979001 (biovar Antiqua) BAM-0006251 trxB CDS
Automated Process Uncurated Go view Yersinia pestis F1991016 (biovar Orientalis) BAQ-0004543 trxB CDS
Automated Process Uncurated Go view Yersinia pestis IP275 (biovar Orientalis) BAC-0008325 trxB CDS
Automated Process Uncurated Go view Yersinia pestis K1973002 (biovar Mediaevalis) BAO-0005089 trxB CDS
Automated Process Uncurated Go view Yersinia pestis KIM (biovar Mediaevalis) ABI-0032542 trxB CDS
Automated Process Uncurated Go view Yersinia pestis MG05-1020 (biovar Orientalis) BAP-0005237 trxB CDS
Automated Process Uncurated Go view Yersinia pestis Nepal516 (biovar Antiqua) BAD-0003128 trxB CDS
Automated Process Uncurated Go view Yersinia pestis Pestoides F (biovar Pestoides) BAI-0002782 CDS
Automated Process Uncurated Go view Yersinia pestis UG05-0454 (biovar Antiqua) BAN-0005898 trxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP31758 ADS-0006583 trxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis IP32953 ACZ-0001471 trxB CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis PB1/+ AFV-0001781 CDS
Automated Process Uncurated Go view Yersinia pseudotuberculosis YPIII AFW-0003183 CDS
Context Table to toptop

Listed below are features that lie nearby this feature. Features encoded in multiple intervals may appear more than once in the table. Features that span the origin will have a left endpoint greater than the right endpoint.

Features overlapping the region 979236 to 990201
FeatureIDNameFeature TypeStrandLeft EndRight EndRelationship
AEC-0000001sourceforward14686137Contains
AEC-0000850infACDScomplement979376979594Downstream
AEC-0000851aatCDScomplement979879980583Downstream
AEC-0000852cydCCDScomplement980625982346Downstream
AEC-0000853cydDCDScomplement982347984113Downstream
AEC-0000854trxBCDScomplement984236985201Matches
AEC-0000855lrpCDSforward985746986240Upstream
AEC-0000856ftsKCDSforward986375990364Upstream
Release Notes to toptop
submitted to GenBank; assigned accession number CP000948